Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04788 ATGGATTACACCAATTCATCCCTTCATGTAGAGGCTGCTGTTCAACCAAAGCGCGCCCCTCTCCGTAAGATTGCCGCGGTGGCGTCTATAGCCGCCGGCATACAATTTGGGTGGGCACTACAGCTCTCCCTACTCACACCCTATGTCCAACTCCTCGGAGTACCACACAAATGGGCATCCAACATTTGGCTATGCGGCCCTATATCCGGCATGATCGTCCAGCCAATCGTCGGTTACTACAGTGACCGAAGTCATTCACGTTTCGGTCGCCGCAGGCCTTTCATCTTCTTTGGCGCTATTGCAGTGGCCCTTGCCGTTTTCTTCATTGGCTACGCTGCAGATATCGGTCACGCCTTAGGCGATGATCTGAACAAAAAGACACGTACTCGTGCTGTTGTCATTTTTGTCCTAGGCTTTTGGGTACTAGATGTCGCTAACAATATGCTCCAAGGACCATGTCGTGCTTTCATAGGCGACCTCGCAGATGGTGATCACTCTCGAATGAGAATGGGTAATGCTTTGTTCTCTTTCTTCATGGCCATCGGTAATATCCTTGGTTATGCCGCTGGCTCTTATGGCAAACTCCACAAAATGTTTCCTTTTACGGAAACCAAAGCATGTGATGTCTTTTGTGCCAATCTCAAAAcatgtttctttttttcaatttttcttctcaTCATAGTATGTACCTTCGCTCTACTTTATGTGGAAGACATTCCACTTCAATCACAACCAGAAATTCGATTAGCACCGGAGGTAATTAATTTTGCTGACCCCGGCTGCATTGGAGAGTTACTAGATGCATTTAACGGACTAAAGAAACCGATGTGGATGTTGTTGTTAGTAACAGCTATTAATTGGATAGCATGGTTCCCATTCTTTTTGTTCAATACTGATTGGATGGGTCACGAAGTGTATGGTGGAAATTCGGGAGAAATGGCTTATGCCACCGGTGTACGTGCTGGATCATTGGGGCTTATGATTCAGGCATTTGTGCTTGCTATAATGTCGCTGGCAGTTGAACCATTGAGCCGTGTTGTTGGTGGAACTAGGCTGTGGGGAATAGTTAATATTATCCTCGGTATTGCACTTGCTATGACGGTTGTCATCACCAAGGTAGCTCAACATGAACGGCAGGGCAGCACCGGAGGGACACCATCTACAGGTGTTAAGGCTGGGGCATTCAGTTTCTTTGCCATCGTTGGAATCCCTCTTGCGATTAATTTCAGTGTCCCATTTGCTTTAGGATCTATTTATTCCAGCTCAACAGGGGCCGGGCAAGGTTTATCTTTGGGAGTCCTCAATCTTGCAATTGTCATTCCACAGATGATAGTATCGTCGGTAAGTGGACAGTTTGATGCTTTGTTTGGTGGTGGTAACTTGCCTATGTTTGTGGTGGGTGCGGTGGCAGCAGTGATCAGCAGTATATTGGCATTTATCCTTCTGCCTACTCCAAAGCCGTCTGATATGGCGAAGGCTTCAATTACCACCTCTGGTGGTCATTAA 1506 0.4608 MDYTNSSLHVEAAVQPKRAPLRKIAAVASIAAGIQFGWALQLSLLTPYVQLLGVPHKWASNIWLCGPISGMIVQPIVGYYSDRSHSRFGRRRPFIFFGAIAVALAVFFIGYAADIGHALGDDLNKKTRTRAVVIFVLGFWVLDVANNMLQGPCRAFIGDLADGDHSRMRMGNALFSFFMAIGNILGYAAGSYGKLHKMFPFTETKACDVFCANLKTCFFFSIFLLIIVCTFALLYVEDIPLQSQPEIRLAPEVINFADPGCIGELLDAFNGLKKPMWMLLLVTAINWIAWFPFFLFNTDWMGHEVYGGNSGEMAYATGVRAGSLGLMIQAFVLAIMSLAVEPLSRVVGGTRLWGIVNIILGIALAMTVVITKVAQHERQGSTGGTPSTGVKAGAFSFFAIVGIPLAINFSVPFALGSIYSSSTGAGQGLSLGVLNLAIVIPQMIVSSVSGQFDALFGGGNLPMFVVGAVAAVISSILAFILLPTPKPSDMAKASITTSGGH 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04788 501 PANTHER SUCROSE TRANSPORT PROTEIN SUC7-RELATED 5 489 - -
Tsu04g04788 501 SUPERFAMILY MFS general substrate transporter 22 487 IPR036259 -
Tsu04g04788 501 CDD MFS_SLC45_SUC 26 479 - -
Tsu04g04788 501 Pfam MFS/sugar transport protein 33 188 - -
Tsu04g04788 501 TIGRFAM GPH_sucrose: sucrose/H+ symporter 20 486 IPR005989 GO:0005887|GO:0008515|GO:0015770
Tsu04g04788 501 Gene3D MFS general substrate transporter like domains 22 244 IPR036259 -
Tsu04g04788 501 PANTHER SUGAR TRANSPORTER 5 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04788 Tsu-Chr4 55064929 55067210 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04788 15 501 Sucrose Transporter Gene Family AT1G22710 62.575 0.0 611
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04788 K15378 - gmx:100785359 672.93