Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04773 ATGGAGACTCacactcttcttcttcctcttggtCTTCTTTCATCTCAAAATccaacttcttcttcttattgCATCCCTCGTTcacataacaacaacaacaaccatttTCTGAAACTACTTTCCTCCAATCAAATTAACCGTTTCTCCAACTTCACAACAACTCCACTAGCCGCAATTCCAAATCCTTCTCCCACAATTCCTACAACCGATGATACACTCACAACTCCCACTCTCAGAGATATATGTCAACCTCACGTTCCCGACCAATTCCTCCAAAGGCAATTTCAACTGTTTTCCCTTTTCAATTTCTTTCCACCATTATTCTCTCCCCCTAATTTTATGCCTGCTGTAATATGTTTCAGGATGGAAGAGGTTGGATATATCATGCCTACACAAGTCCAAAAGCAAGCATTGCCTCATCTTTTTTCCGGCCGCGATTGCATACTTCATGCTCAGACAGGTTCTGGGAAGACACTTGCATACTTGCTTTTGATTTATTCCGTCATCAACACTAAAAAATCTTCTTTTCAAGCACTAGTTTTGGTGCCCACCCGTGAACTTGGCATGCAAGTTGCCAAGGTAGCTAGGATACTGGCGGCAAAGCCAGCTGGAGTTGAAGGGGAGCAGAGATCATGTACCATCATGGCTTTGTTAGATGGAGGAACATTGAGAAGGCACAAGAGTTGGTTTAAGGCAGAGCCTCCAGCAATAGTGGTTGCAACAGTTGAGAGTTTGTGCCAAATGCTTGAAAGACAACTTTTTTCGCTTGGAACCTTGCGGGTGCTGGTCGTTGATGAGGTTGACTTcattttcaattcttcaaagCAAGTGAATTCTCTCCGGAAGATTTTGACCTCATATTCTTCTTGTAATAACCGTCAGACAGTTTTTGCCAGTGCATCTATACCACAACACAATCGATTTCTTAACGAAGCTATGCAGCAGAAATGGACCAAGAGGAATGTGATCCATATTCATGTTTGTCCGGTGGAGCCCATGCCATCTCGCCTATATCATAGATTTATAGTATGTGATATGAAGAGAAAACTACAAACCCTGTTATCATTGATTCAATCTGATGCTCCTGAGTCTGGCATTATATTCGTTGGTGAGCAGTCTGAGAAGTCGAAAAAGGCTGGAAATGCTCCATCCACATCCCTTGTGATTGACTTTCTAAAGACATCATATCAGGGTTCTTTAGATATCCTCCTCCTCGAAGATGACATGAATTTCAATTCACGAGCAGCTTCTCTGTTGGAGGTTAGGAAAGGTGGCGGCTATCTTCTAGTGGCAACGGATGTGGCTGCTAGAGGAGTCGACTTTCCAGAAATGACTCACATATACAACTTTGATCTGCCAAAAACTGCCATAGATTATCTTCATCGAGCAGGGAGGACTTGTAGAAAACCCTTTTCTGACGTCAATTGTTCTGTCACCAGCATTATAGTCTCTGAGGAGCGGTTTGTTCTGAAGAAATATGAAAATGAGTTGATGTTTGTGTGTGAAGAGCTTATTCGATAA 1521 0.403 METHTLLLPLGLLSSQNPTSSSYCIPRSHNNNNNHFLKLLSSNQINRFSNFTTTPLAAIPNPSPTIPTTDDTLTTPTLRDICQPHVPDQFLQRQFQLFSLFNFFPPLFSPPNFMPAVICFRMEEVGYIMPTQVQKQALPHLFSGRDCILHAQTGSGKTLAYLLLIYSVINTKKSSFQALVLVPTRELGMQVAKVARILAAKPAGVEGEQRSCTIMALLDGGTLRRHKSWFKAEPPAIVVATVESLCQMLERQLFSLGTLRVLVVDEVDFIFNSSKQVNSLRKILTSYSSCNNRQTVFASASIPQHNRFLNEAMQQKWTKRNVIHIHVCPVEPMPSRLYHRFIVCDMKRKLQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTSLVIDFLKTSYQGSLDILLLEDDMNFNSRAASLLEVRKGGGYLLVATDVAARGVDFPEMTHIYNFDLPKTAIDYLHRAGRTCRKPFSDVNCSVTSIIVSEERFVLKKYENELMFVCEELIR 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04773 506 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 349 506 IPR001650 -
Tsu04g04773 506 CDD DEADc 122 304 - -
Tsu04g04773 506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 472 IPR027417 -
Tsu04g04773 506 Gene3D - 334 503 IPR027417 -
Tsu04g04773 506 Pfam Helicase conserved C-terminal domain 349 468 IPR001650 -
Tsu04g04773 506 SMART ultradead3 126 341 IPR014001 -
Tsu04g04773 506 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 138 320 IPR014001 -
Tsu04g04773 506 SMART helicmild6 386 470 IPR001650 -
Tsu04g04773 506 Gene3D - 107 324 IPR027417 -
Tsu04g04773 506 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 24 505 - -
Tsu04g04773 506 CDD SF2_C_DEAD 339 468 - -
Tsu04g04773 506 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 58, CHLOROPLASTIC 24 505 - -
Tsu04g04773 506 Pfam DEAD/DEAH box helicase 131 304 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04773 Tsu-Chr4 54974493 54978960 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04773 104 504 Eukaryotic Initiation Factors Gene Family AT1G72730 25.971 1.78e-26 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04773 - - mtr:MTR_4g131750 730.709