Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04767 ATGGTTGTGGAGGATCGTTTGGTGAATGATGATGTTTGTGGTGATGATTTTCCGGTCGGTATGCGTGTTCTGGCTGTTGACGATGATCGAACTTGTCTCAAGTTGTTGGAGAGTTTGCTTCGCAAATGCAAATATAAGGTTACCACAACTACAGAGGCAGTGAAAGCACTACAAATGTTGAGGGAAAACAGAAATCAGTTTGACCTTATTATCAGTGATGTAAATATGCCTGAAATGGATGGATTTAAGCTCCTTAAGCTAGTTGGACATGAAATGGATGTACCATTTATCATGTTGTCAGGAAATGGTGATAAAGAGAGGGTGATGAAAGGTGTGATACACGGCGCTTGTGACTATCTAATGAAACCTATCCGAATGGAAGAGCTGCAAAACATATGGCAACATGTAGTGAGAAAGAAGATTGAAAGTAAGGATCAGAATAAACGTACCGCTGCTGATGAGGAAAAAATCAGCAATGTGGCTGGGGTATCTAGTCAAGGCACCACATCTGAAAATATTGCTAACAAGAGTCAAAGCTGGGgaccaaaaagaaaagaacgaagtgaggaagaagaagaagaagatgaagaagaaggagaagaatcGGAAGAAGATAATGATGAAGAGAATGATGAGCAACGCTCAACTCGGAAGAAGCCCCGTTTCGTTTGGGATAACGACTTGCATAAAAAATTTGTTGCTGTAGTTTGTCAACTTGGCCTTGACAAGGCTTATCCCAAGAAAATACTTGACTTGATGAATGTTGAAGGACTTACAAGGGAAAATGTAGCTAGCCATCTGCAGAAATACAGACTTAGTCTCAAAAGGCCAACTAAACAGGCTAGAGTAGATGCTACATTGGATTCTCACTCACAAATGGGTTCAGTAGGTGGGTATGGAGATTTTAGCACCTTGTCTGGATCAAGAAGAATCTCAAGCAGCACATTGTCATCATATGCATCTAGTGACATATTTAGTCGGCTAAACACACCGTCTAGATTGAACTTGAGAGGAATTAGTTCTTCCGCACCGGTCCTTGCGCTTCAATCTCCAAATTTTAACAGATTCAAGCGGCCGATGTTTTCTGCAAAAGAGAGCTCAAGTTTTTTACAGGGCATCCGAACGTCAATGTCGATGAACCAGTTTCAGCATAACAGTTATCCAACCGGTAATATGAAGTTAAATCCAATTGATGATTCAAGTGCATTTACAGCTTCCACTAGCtttcaaaatattaaagttACTGTTAATAATGCAAATAGTTCTCTTTCTTGCATCTCAAGCAATCACCTGCTAACACATAATTCAGGACCATTCATAAATCACTCTTCTGTTGGAGGTGCTGCTGTGAAAAGAGAACCTTTTAACCCTGCCATGAGTGGTTCCTCTAATTCATTAGATTATAATCGGATAAGCGAAAGCTGGAAGAGTTCAGCTCATTTTTCTAACTTTGCTACCAATTCTTCTGTATTGAGTGGGGATTTTAACAATGATCAAATGTCTCACAATAGCTTAAAGTTTGCCTCTCTCAGTACTCATTTTAAGAAAACTCCAGTTGATTTTGCTTCGACGAATGCCGTTGCTGTTCCTTCGGAGGAAGCGACGCAATGTCAAGATGGATTACTTGAGGATGTTGTAAAGGGTGTATGTTACACGCAGCAGCAAAATGCGGGTTCTGCCTTCAACAATAACTTGAACTCTCTAGCTACTCCTAATGGAGATAATAGCTCCATGGGACATAGTTTAGCCCAAAATAATAGTCTATCAACTACTCAGATGCCTGAAGTTGAGAAATTCTATTCAGATACAAGAATTGAATCAAATGGTGATTGCTTTTTTGAGCAAATGCTTTCTCTAGAAGGATTCATTCAGAATAATTGTGCCTCCTTGGATGACACAATAACTGAAAGGGTCATATAG 1920 0.3844 MVVEDRLVNDDVCGDDFPVGMRVLAVDDDRTCLKLLESLLRKCKYKVTTTTEAVKALQMLRENRNQFDLIISDVNMPEMDGFKLLKLVGHEMDVPFIMLSGNGDKERVMKGVIHGACDYLMKPIRMEELQNIWQHVVRKKIESKDQNKRTAADEEKISNVAGVSSQGTTSENIANKSQSWGPKRKERSEEEEEEDEEEGEESEEDNDEENDEQRSTRKKPRFVWDNDLHKKFVAVVCQLGLDKAYPKKILDLMNVEGLTRENVASHLQKYRLSLKRPTKQARVDATLDSHSQMGSVGGYGDFSTLSGSRRISSSTLSSYASSDIFSRLNTPSRLNLRGISSSAPVLALQSPNFNRFKRPMFSAKESSSFLQGIRTSMSMNQFQHNSYPTGNMKLNPIDDSSAFTASTSFQNIKVTVNNANSSLSCISSNHLLTHNSGPFINHSSVGGAAVKREPFNPAMSGSSNSLDYNRISESWKSSAHFSNFATNSSVLSGDFNNDQMSHNSLKFASLSTHFKKTPVDFASTNAVAVPSEEATQCQDGLLEDVVKGVCYTQQQNAGSAFNNNLNSLATPNGDNSSMGHSLAQNNSLSTTQMPEVEKFYSDTRIESNGDCFFEQMLSLEGFIQNNCASLDDTITERVI 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04767 639 MobiDBLite consensus disorder prediction 159 179 - -
Tsu04g04767 639 CDD REC_typeB_ARR-like 23 137 - -
Tsu04g04767 639 Pfam Response regulator receiver domain 23 131 IPR001789 GO:0000160
Tsu04g04767 639 ProSiteProfiles Response regulatory domain profile. 22 137 IPR001789 GO:0000160
Tsu04g04767 639 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 219 272 IPR006447 GO:0003677
Tsu04g04767 639 SUPERFAMILY Homeodomain-like 216 276 IPR009057 -
Tsu04g04767 639 MobiDBLite consensus disorder prediction 143 218 - -
Tsu04g04767 639 SMART REC_2 21 133 IPR001789 GO:0000160
Tsu04g04767 639 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 630 - -
Tsu04g04767 639 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 630 IPR045279 GO:0009736
Tsu04g04767 639 Gene3D - 20 158 - -
Tsu04g04767 639 Gene3D - 215 276 - -
Tsu04g04767 639 SUPERFAMILY CheY-like 20 145 IPR011006 -
Tsu04g04767 639 MobiDBLite consensus disorder prediction 190 210 - -
Tsu04g04767 639 Coils Coil 183 212 - -
Tsu04g04767 639 PIRSF RR_ARR_type-B 3 628 IPR017053 GO:0003677|GO:0003700|GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04767 Tsu-Chr4 54942763 54946292 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04767 15 420 Response Regulator Gene Family AT2G25180 44.976 1.05e-104 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu04g04767 Response_reg 1.3e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04767 K14491 - mtr:MTR_4g131580 770.385