Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04760 ATGCAATGGCAGCGTTCGACAGCAAGGAAAAACGCACAGTGCAGGTTGGCGGTGGTAGTCGGCGATGGATTGAAGATTGGCGGCGGTTTTCCGATCTCAGAGATTGATGCTGGACAAGCTTGTGGGAGTGAGAACTGGAGATTTAAAAAGATCGAAGAAGGAACCAAAGATTTGGAAGAGAAAGTTTGGAATTCACATCATCGGGTTCATTTTCTAATTAAAGtGAACTTGTGCTGGAGATGCTCTGGGACCGGCACTAATTGCATAACCAGCAAAAATTTAAGGATCAGAAAGAATATTCTGAATTTACGGATATTGGCAGTGGTTTTAATTAACTTGATGTCTATTAGAAAACCCCCATTCCCTCGGCTCCTCCTTAACAATGTCTCTTGCATGAGAAATGCCCAGCAAATTCTGTCTCATGTGAATGTCTCTCTTCACGATGGAGGAGCATTTGTGCTAACAGGTGCAAATGGCTCAGGAAAGACAACTTTCCTGCGGATGCTAGCTGGGTTTTCTCGTCCTTCTGCAGGTGAAGTCCTTTGGAATGGCCACGACATTCAAAAATCTGCAATCTTCCATCAGTATAAACTTCAGCTTAACTGGGTCTCCCTCAGGGATGCAATTAATGAGAAGTCTACTGTTCTGGAGAATATTCAATGGTTTGAACTTCTTGAAGGCAAGCACGGGAAGGCTATGCCTGCGCTTCAGTTGATGGGACTAGGAAGATTGGCTAAGGAAAAGCCAAAGATGCTTTCAATGGGCCAGCGAAAAAGATTGCAACTTGCCAGAATGCTCGCAATTGATCGTCCCATATGGTTGCTAGATGAGCCTTCAGTTGCATTAGATGATGAAGGTGTAAAGTTACTCGAGTACATTATTGCAGAACACAGGAAACAGGGAGGAATTGCTATTGTAGCAACTCATTTACCCATTGAGATGGAAGATTCCATGGTCTTGAGGCTGCCTCCAAGGTTTCCAAGGAGGATGAGTCATACAGATATGCTTGGCCGGATGGATATTAGttaa 1029 0.4402 MQWQRSTARKNAQCRLAVVVGDGLKIGGGFPISEIDAGQACGSENWRFKKIEEGTKDLEEKVWNSHHRVHFLIKVNLCWRCSGTGTNCITSKNLRIRKNILNLRILAVVLINLMSIRKPPFPRLLLNNVSCMRNAQQILSHVNVSLHDGGAFVLTGANGSGKTTFLRMLAGFSRPSAGEVLWNGHDIQKSAIFHQYKLQLNWVSLRDAINEKSTVLENIQWFELLEGKHGKAMPALQLMGLGRLAKEKPKMLSMGQRKRLQLARMLAIDRPIWLLDEPSVALDDEGVKLLEYIIAEHRKQGGIAIVATHLPIEMEDSMVLRLPPRFPRRMSHTDMLGRMDIS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04760 342 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 123 314 IPR027417 -
Tsu04g04760 342 PANTHER ABC TRANSPORTER I FAMILY MEMBER 1 122 336 IPR005895 GO:0017004|GO:0022857
Tsu04g04760 342 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 124 339 IPR003439 GO:0005524
Tsu04g04760 342 SMART AAA_5 148 336 IPR003593 -
Tsu04g04760 342 TIGRFAM ccmA: heme ABC exporter, ATP-binding protein CcmA 126 322 IPR005895 GO:0017004|GO:0022857
Tsu04g04760 342 Gene3D - 120 321 IPR027417 -
Tsu04g04760 342 Pfam ABC transporter 139 279 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04760 Tsu-Chr4 54913224 54917846 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04760 137 309 Calmodulin-binding Proteins AT2G36910 29.032 6.67e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04760 - - cpap:110815669 396.741