Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04758 ATGGATGGACCAGCTGGGCATGGTTGTAGTTCAAGTAGAAACTCATTACCACAACGATATAGATTATTGGATCAAACACTCGGTGATGGATCCTTTGGCAAGGTGGAACTTGCTGAAAATGTACGGACTGGTGATAAGGTTGCCATCAAGATGCTTTGCCGTAGCAAGATAAAGGAGAAGCACACGGAAGAAAATgTCAAAAGAGAAATAGAGATTTTAAGACGGCTCAAGCATCCTTACATCATAGAGTTATATGATGTGATAGAGACTCAAACTCACATATGTCTTGTAATGGAATATGTGAAATCTGGGGATCTATACAATTATCTTATAGTAAGGCACCACTTACAAGAAAACAAAGCGCGCAGGTTCTTTCAGCAGATAATATTTGGTGTCCAGTATTGTCACAGATACATGGTTGTTCATAGGGATCTGAAACCTGAGAACATACTCTTGGACTCTGAGTATAATGTGAAGATAACCGATTTTGGACTAAGCAATATAATGCGCGACGGAAACCTTCTTAAAACAAGTTGTGGAAGCCCCAACTATGCAGCTCCTGAGGTTCACTCTGGGAGATTGTATGGACCTGAAGTAGATGTCTGGAGCTGTGGTATTATTTTATATGCTCTTCTTTGTGGAAATTTTGCTTTTGAAGATAAAAACCTGTCAAACCTCACGAAGAAAATTAAGGAAGGGATATACATTCTTCCTCGTCATCTGTCACCGGGTGCTAGAGATTTGATACCAAAGATGCTGGAACCTGACCCTATGAGGAGGATTACCATACCTGAGATCTGTCAACATCCGTGGTTCCAACATACAATGCAACAGCTCCCTGTTGAAAGAAAATGGACTCTTGGGCTTCAGTCTCGAGCTCATCCTGGTGTAATAATGAATGAGGCCCTTATAGCTCTCCAAGAATTAAAAGTTTATTGGAAGAAGATTGGGGACTACAACATGGAGTGCATGTGGGCTCATGGCTTTCCCGGTCATCATCAAGGAACGATGAACAATGTTGTGCATAACAATCATTACTCTATTGATGATTCCAGCATTATTGAGAATATGACTGTTTCTAATTCTAATGCAGTCAAATTTGAACTTCAGCTTTACAGAACTCAGGAAGCGAAGTATCTTCTTGATCTTAAAAGGGTGCATGGTCCGGAGATTCTTTTCTTGGATCTATGTGATGCTTTCTTTTCACGGCTTCGTGTCATCTAG 1224 0.4052 MDGPAGHGCSSSRNSLPQRYRLLDQTLGDGSFGKVELAENVRTGDKVAIKMLCRSKIKEKHTEENVKREIEILRRLKHPYIIELYDVIETQTHICLVMEYVKSGDLYNYLIVRHHLQENKARRFFQQIIFGVQYCHRYMVVHRDLKPENILLDSEYNVKITDFGLSNIMRDGNLLKTSCGSPNYAAPEVHSGRLYGPEVDVWSCGIILYALLCGNFAFEDKNLSNLTKKIKEGIYILPRHLSPGARDLIPKMLEPDPMRRITIPEICQHPWFQHTMQQLPVERKWTLGLQSRAHPGVIMNEALIALQELKVYWKKIGDYNMECMWAHGFPGHHQGTMNNVVHNNHYSIDDSSIIENMTVSNSNAVKFELQLYRTQEAKYLLDLKRVHGPEILFLDLCDAFFSRLRVI 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04758 407 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Tsu04g04758 407 Pfam Kinase associated domain 1 364 405 IPR001772 -
Tsu04g04758 407 SUPERFAMILY Protein kinase-like (PK-like) 24 292 IPR011009 -
Tsu04g04758 407 Gene3D Kinase associated domain 1, KA1 290 405 - -
Tsu04g04758 407 ProSiteProfiles Protein kinase domain profile. 21 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04758 407 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 278 406 - -
Tsu04g04758 407 Gene3D Transferase(Phosphotransferase) domain 1 101 289 - -
Tsu04g04758 407 Gene3D Phosphorylase Kinase; domain 1 11 100 - -
Tsu04g04758 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Tsu04g04758 407 PANTHER SERINE/THREONINE KINASE 19 276 - -
Tsu04g04758 407 PANTHER SERINE/THREONINE KINASE 278 406 - -
Tsu04g04758 407 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 19 276 - -
Tsu04g04758 407 SMART serkin_6 21 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04758 407 Pfam Protein kinase domain 24 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04758 407 SUPERFAMILY KA1-like 266 406 IPR028375 -
Tsu04g04758 407 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 358 406 IPR001772 -
Tsu04g04758 407 CDD AMPKA_C 282 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04758 Tsu-Chr4 54907476 54909886 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04758 25 273 CBL-interacting serine-threonine protein kinases AT2G26980 47.036 2.66e-80 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Tsu04g04758 Pkinase 6.9e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04758 K07198 - gmx:100796687 379.022