Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04756 ATGTTGTTGCGAAATATTGATCAAGCTAGCGGACTTTGTAATGGTACTAGACTACAGGTTAGGGACTTGggcaaaaatattataaaagctTCAATTATCACTGGAAAACATGCTGGTGAAATGATATTTCTTCCAAGGATGGACTTAGTACCTTCAGAATCTGGGCTTCCTTTCAAATTTTCTCGCCGTCAATTTCCTATATGCTTATGCTTTGCAATGACAATTAATAAGAGCCAAGGACAGTCAATGTCCAAGGTTGGACTGTACTTACCTCGGCCAGTCTTTACACATGGTCAGCTGTATGTAGCCATTTCAAGAGTGACAACCAAGAGAGGCTTGAAGATACTTATATTAGACGAAGATGGGAAGCCATGCACCACTACTCTAAATGTGCAGATGAATTTAAATATTGAAGGACTCCATGTCATAAGGTCTTGGGAGATGAATATCACTAATGTTCATGCAAATGGACAAAATATCTTGGtaaaGGAGGAGGATGTATTGATTTTGTCATTTGAGAATGACGGCGAAACACCGCTACGACGAGACGTGGTGACAAAGATACACTGTGATGGTGACGGCAAGAGGATGTGGATAAAACCAATGACTAACACCATCACTGCAATGGCCGGAGACAGCGGCGGATACGGCTGGGGTGAGAGGAAGAGAAAAGGAGTTGTCGTATCGATGAGTTGGGAGGAAAAGTTTCACCAGGCTAGGAGAGGTCAAGCAACCGACCCACACAGCATTGCTGAGAGATTGCGAAGGGAAAGAATTGCTGAGAGAATGAAAGCATTGCAGGAACTTGTTCCTAATGCTAACAAGACAGACAAGGCCTCCATGCTGGATGAGATCATCGATTATGTGAAGTTCCTACAGGTTCAAGTCAAGGTTTTGAGTATGAGCAGATTAGGTGGAGCAGCAGCTGTAGCTCCCCTTGTTGCTGATATGTCCTCCGAGGGTGTTAGTGACTGCGTCCAAGCCAACGGCAACGGTGGGGTCCACACCAGAAACCCTAAAACGGCGTCGTCTTCAAACGAAAGCCTCACAATGACAGAACATCAGGTGGCAAAGCTAATGGAAGAAGACATGGGATCCGCCATGCAATACTTACAAGGCAAAGGTCTCTGCCTCATGCCTATTTCTCTTGCAACTGCAATCTCTACAGCCACGTGTCACACTAGGAGCCCTTTGATCAATGCTGCTAATAACAATGTTAACAACGGTAATGGTAACCATGTTGTTGCATCTAACGGTGATGGGCCATCCTCTCCCGGAATGTCCGTTAATAGCATTGTCAAAGATGCTAACTCCGCTTCTAAGTCGTAG 1329 0.4432 MLLRNIDQASGLCNGTRLQVRDLGKNIIKASIITGKHAGEMIFLPRMDLVPSESGLPFKFSRRQFPICLCFAMTINKSQGQSMSKVGLYLPRPVFTHGQLYVAISRVTTKRGLKILILDEDGKPCTTTLNVQMNLNIEGLHVIRSWEMNITNVHANGQNILVKEEDVLILSFENDGETPLRRDVVTKIHCDGDGKRMWIKPMTNTITAMAGDSGGYGWGERKRKGVVVSMSWEEKFHQARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQVQVKVLSMSRLGGAAAVAPLVADMSSEGVSDCVQANGNGGVHTRNPKTASSSNESLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHTRSPLINAANNNVNNGNGNHVVASNGDGPSSPGMSVNSIVKDANSASKS 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04756 442 MobiDBLite consensus disorder prediction 410 442 - -
Tsu04g04756 442 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 241 303 IPR036638 GO:0046983
Tsu04g04756 442 SMART finulus 249 298 IPR011598 GO:0046983
Tsu04g04756 442 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 239 401 - -
Tsu04g04756 442 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 243 292 IPR011598 GO:0046983
Tsu04g04756 442 MobiDBLite consensus disorder prediction 329 349 - -
Tsu04g04756 442 Gene3D - 236 300 IPR036638 GO:0046983
Tsu04g04756 442 CDD SF1_C_RecD 68 110 - -
Tsu04g04756 442 PANTHER TRANSCRIPTION FACTOR BHLH69 239 401 - -
Tsu04g04756 442 Pfam Helix-loop-helix DNA-binding domain 248 293 IPR011598 GO:0046983
Tsu04g04756 442 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 131 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04756 Tsu-Chr4 54882637 54889143 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04756 238 431 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 67.677 2.70e-82 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu04g04756 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04756 - - cpap:110825493 281.952