Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04754 ATGACTGAGAAGGAAAATCCTAATTCTCACTCGGCTCTGCTCCATGGAAAATACGAGCTAGGTCGAGTTCTCGGTCATGGAACATTCGCGAAGGTTTATCATGCTAAGAATCTCACCACTGGTAAAAACGTAGCCATGAAAGTTGTTGGAAAAGAAAAGGTTATCAAAGTTGGAATGATGGAACAGATCAAAAGAGAGATCTCTGTTATGAAGATGGTGAAACATTCAAACATAGTTCAAATCCATGAAGTTATGGCTTCAAAATCTAAGATCTACATCGCCATGGAACTCGTTCGTGGCGGTGAACTTTTCAACAAAATCGTCAAAGGTCGTCTTAAAGAAGATGTTGCTAGAGTCTATTTCCAGCAATTAATCTCAGCCGTTGATTTCTGTCACAGTCGCGGTGTTTACCACCGTGATTTGAAGCCGGAGAATCTTCTTCTCGATGAAGAAGGTAATCTTAAGGTTTCTGATTTTGGTCTCAGTACTTTCGGTGAACATATGAGACAAGATGGATTGTTGCATACCACGTGTGGTACTCCGGCGTATGTTTCGCCGGAGGTAATTGCGAAGAAAGGCTACGACGGTGCTAAGGCGGATATTTGGTCTTGTGGTGTAATTCTTTACGTTCTTCTCGCTGGATTTTTACCTTTTCAGGATGATAATGTGGTTAATATGTATAAGAAAATTTACAGAGGCGATTTCAAATGTCCACCGTGGTTTTCTTTGGAAGCTAAGAGGCTTATCACGAAGCTTCTAGATCCTAATCCGAATACAAGAATTTCGATATCTAAGATAATGGAGTCTTCTTGGTTTAAGAAACCGGTTCCGAAGAGCGTTGCAAGGAGGAAGAAGgagaaagaagaggaagaagaagaaaagggatTTGGCTTTTTGGAGAGCGAGAAATCATCGATGACGATGAATGCTTTTCATATAATTGGATTATCTGAGGGGTTTGATTTGTCACCTTTGTttgaggagaagaagagagaagagagggaGGAGGTGAGGTTCGCCACCGCGGGGACACCGAGCAGAGTGATATCGAAATTGGAGCAAGTGGCGAAGGCGATGAAGTTTGATGTGAAGAGTAGTGATACGAAGGTTAGGCTGCAGGGGCAAGAGAGAGGGAGAAAGGGTAAATTGGGTATTGCCGCGGATATTTACGCAGTGACACCGTCGTTTATGGTGGTGGAGGTGAAGAAAGATAGAGGTGATACTTTGGAGTATAATGAATTTTGGAGTAAAGAACTTCGTCCTGCTCTTAAAGATATTTTCTGGACATCTGCTGATCCTCCAGCTGCTTGA 1311 0.4058 MTEKENPNSHSALLHGKYELGRVLGHGTFAKVYHAKNLTTGKNVAMKVVGKEKVIKVGMMEQIKREISVMKMVKHSNIVQIHEVMASKSKIYIAMELVRGGELFNKIVKGRLKEDVARVYFQQLISAVDFCHSRGVYHRDLKPENLLLDEEGNLKVSDFGLSTFGEHMRQDGLLHTTCGTPAYVSPEVIAKKGYDGAKADIWSCGVILYVLLAGFLPFQDDNVVNMYKKIYRGDFKCPPWFSLEAKRLITKLLDPNPNTRISISKIMESSWFKKPVPKSVARRKKEKEEEEEEKGFGFLESEKSSMTMNAFHIIGLSEGFDLSPLFEEKKREEREEVRFATAGTPSRVISKLEQVAKAMKFDVKSSDTKVRLQGQERGRKGKLGIAADIYAVTPSFMVVEVKKDRGDTLEYNEFWSKELRPALKDIFWTSADPPAA 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04754 436 Gene3D Kinase associated domain 1, KA1 307 429 - -
Tsu04g04754 436 Gene3D Transferase(Phosphotransferase) domain 1 105 306 - -
Tsu04g04754 436 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04754 436 SUPERFAMILY Protein kinase-like (PK-like) 15 281 IPR011009 -
Tsu04g04754 436 Gene3D Phosphorylase Kinase; domain 1 11 104 - -
Tsu04g04754 436 CDD CIPK_C 309 424 - -
Tsu04g04754 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Tsu04g04754 436 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 9 431 - -
Tsu04g04754 436 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04754 436 CDD STKc_SnRK3 17 271 - -
Tsu04g04754 436 SMART serkin_6 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04754 436 Pfam NAF domain 307 364 IPR004041 GO:0007165
Tsu04g04754 436 PANTHER - 9 431 - -
Tsu04g04754 436 ProSitePatterns Protein kinases ATP-binding region signature. 24 51 IPR017441 GO:0005524
Tsu04g04754 436 ProSiteProfiles NAF domain profile. 303 327 IPR018451 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04754 Tsu-Chr4 54844019 54846261 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04754 9 430 CBL-interacting serine-threonine protein kinases AT4G30960 73.536 0.0 620
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Tsu04g04754 Pkinase 2e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04754 - K07198 gmx:100781111 695.656