Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04752 ATGCTCCGCAAGTTGTTCTTTCGTAAGCCTCCTGACGGTCTTCTCGAGATCTGCGAGAGAGTTTACgtttttgaTTGCTGTTTCACAACGGAATCTTGGAATGAAGAGAAGTATAAAGTTTATATGGATGGTATAGTAGCTTCTCTTAGAGAGACTGTACCTGATGCTTCTCTAATGGTTTTCAATTTTCGCGAGGAAGAGACGAAAAGTTTGATGGCAAACGTAATGTCTGAGTATGATATTACTATAATGGATTATCCTAAGCACTATGAAGGTTGTCCTGTGCTTAAAATGGAGCTCATTCACCACTTTTTAAGGTCTAGTGAAAGCTGGCTATCACTTGGTCAACATAATGTGTTGTTGATGCATTGTGAACGTGGTGCTTGGCCGGTTTTGGCTTTTATGTTGGCTGCATTGTTGATTTATCGGAAGGTTTATACTGGGGAGCATAGGACTTTGGATATGGTTTATCGGCAGTCCCCACACGAGCTTTTGCATTTGTTGACTCCATTGAATCCACTCCCTTCACAATCGAGGTATCTGCAGTATATTTCCAGGAGGAATGTGGCCATAGATTGGCCTCCGCTTGACAGGGCACTCATGTTAGACTGTATCATTCTCAGATTCTTCCCAAACTTTGATGGGAAAGGTGGTTGCCATCCCTTGTTTAGAATTTACGGACAGGATCCTTTTAGTGGGGATAAAAGTCCTAAAATGTTGTATTCAACGCCAAAGAAAAGCAGAAATATCCGGGCTTACAAACAGGGAGAGTGCCAACTAATTAAAATTGATATCAATTGCCATATTCAAGGTGATGTCGTGATTGAGGGTATTGACTTGAATGATGATATGGAACATGAGATGATGATGTTCCGAGTAATGTTCAACACAGCTTTTGTTAGATCCAATATTCTGATGCTTAATCGCGATGAAATTGACGTTCTATGGGATGCTAAAGATCACTTTCCAAAAGATTTCAGAGCTGAGATCCTTTTCTCAGAGATGGATGCTACTGCAGCAATTATTGAAGATGGTACATCATGCTTTGAGGAGAAAGAGGGACTTCCGATTGAAGCATTTGCCAAGGTTCAAGAGATCTTTAGCCATGTGGACTGGATGGACCCAAAGGCTGATGCTGCACTAAATGTGCTCCAACATATAAATATCATGAATGACAAGCTGGATAAAGTTTCTCCAGTTTCTTCTCGTTCCCCTGGAACACCTCCTCTGCGGACTCCCTCAACTAGTGCTAAAGAAGTCCATGACTCTCCTCCCCACACAGAATCACCTCCTCGTCATATTTTTCCTTTGAAATCAGAACATCAACCACAAAACAGCAGTTATTCACCTATTTCTGGCCCGACACCTGGTACCCATCCTTCACTTTCAGCAGTTTCTTCAATTCAGCCATCCCCTCCACTTTCTTCCAAAACACCTTCGAATGACATTCCACCTGTCAAAACAAGACTCGAGTCTCCCCCTTCACAACCTCCAACTCCACCTCCTCCCACCCCTCCACTAAAAGATCAGAAAGTAGTTAGAGCTGGATCCCCATCCCCACCACTTAGCCCAAAGAAGGAACTACATGTTAAAGCTGGACCTTCTCCTGTTCCATCTCATGTGAATGAGAAGCCACATGTTAGAGATGGACATTCTCCTCCTTCTCCTCCTCTTCCTCCATCACCTCCTCTAAAAGCGGAACAACCTTCTAGGTTTAAGCCCCCCCCGCCGCCACCACCGCCTCATCTTTCAACAGGAGCTGCAAGTCCTGCTATAGCACCGGCGGCACCGCCTGCACCACCTCCACCTGCTAGAGCTGCAAGTCCTGCTATAGCACCGCCGGCACCGCCTGCACCACCTCCACCTGCTAATGCTTCAACGCAAAAGTCTCCACCTGTTCCACCACCTCCAATTCCTTTGGGTAAAGAAGGACTAAAACCAGGCGGTGCTTTTCCAATGTCTCTTAAGGTCCCAGGCACAGCAGGACCTGGACGAGTTCTAATTGGCTCAAAAAATAACTCCAAAAAGTTGAAGCCATTGCATTGGATGAAGCTATCTAGAGCAGTGCAAGGAAGTTTGTGGGACGAGACACAAAAATCTGGTGAAGCTTCCAAAGCCCCAGAGATTGATATCTCGGAGCTCGAGAATCTCTTCTCAGCAGCAGCCCCAAGTTCAGGCCTTGCCAAGAAGTCAAATGTCCAAAGCTCAGCTAAGCCTAAATCTGAGAAAGTGCAACTGATTGATCATAGACGAGCATATAATTGTGAAATCATGCTTTCACAAGTGAAGGTGCCATTGCATGATTTAATGACCTCAGTGCTAGAACTAGAAGAGTCAGCGCTAGACACTGATCAAGTTGAGAACCTCATAAAGTTTTGTCCTACAAAAGAGGAGATGGAAGTAATCAAGAGTTATGACGGGGAAAAGGAGAAATTAGGGAGATGTGAACAGTTCTTTGTAGAATTGATGAAAGTACCACGGGTAGAATCTAAGCTCAGGGTCTTTTCATTCAAGATTCAGTTCCATTCTCAGGTTTCTGATCTTAAAAATAGCCTAAATGCTGTGAATTCTGCTGCAGAAGAGATCAGGAATTCCGTCAAATTGAAGAGAATTATGCAAACAATACTTACTCTAGGAAATGCTTTGAATCAAGGAACTGCCAGGGGTTCGGCTATTGGATTCAGATTAGATACCCTTCTTAAACTCACTGAGACACGTGCACGGAACAACAAAATGACTCTCATGCATTATCTTTGTAAGGTGTTGGATGACAAATTACCAGAAGTTTTAGACTTCTCTAAGGATCTTGCTAACCTAGAGCCAGCAGCAAAGATCCAATTGAAGTTTCTGGCGGAGGAGATGCAAACTATAAACAAAGGGTTAGAGAAAGTTGTGCAGGAATTATCCACTTCTGAAAATGATGGTCCTATATCAGAAACATTCCGCAAGAAATTGAAAGCGTTCCTCTGTTCTGCTGAAGCTGAAGTCCGGTCATTGGCTTCACTATATTCTGCTGTGGGCAGGAACGTGGATGCATTGATTCTTTATTTTGGTGAAGATCCATCTCGTTGTCCATTTGAGCAAGTTGTCACAACTTTGCTCAACTTCACTGGAATGTTCAACAAAGCCCATGAAGAAAACTGCAAGCAGCAAGAGCTTGAAATGAAGAAAACAGCAGaaagtgagaaaaaaaaatgtgaatcaGAAAGGATATTACCTACAGCAATCCCGACTGGCAATGTCAATTGA 3249 0.4324 MLRKLFFRKPPDGLLEICERVYVFDCCFTTESWNEEKYKVYMDGIVASLRETVPDASLMVFNFREEETKSLMANVMSEYDITIMDYPKHYEGCPVLKMELIHHFLRSSESWLSLGQHNVLLMHCERGAWPVLAFMLAALLIYRKVYTGEHRTLDMVYRQSPHELLHLLTPLNPLPSQSRYLQYISRRNVAIDWPPLDRALMLDCIILRFFPNFDGKGGCHPLFRIYGQDPFSGDKSPKMLYSTPKKSRNIRAYKQGECQLIKIDINCHIQGDVVIEGIDLNDDMEHEMMMFRVMFNTAFVRSNILMLNRDEIDVLWDAKDHFPKDFRAEILFSEMDATAAIIEDGTSCFEEKEGLPIEAFAKVQEIFSHVDWMDPKADAALNVLQHINIMNDKLDKVSPVSSRSPGTPPLRTPSTSAKEVHDSPPHTESPPRHIFPLKSEHQPQNSSYSPISGPTPGTHPSLSAVSSIQPSPPLSSKTPSNDIPPVKTRLESPPSQPPTPPPPTPPLKDQKVVRAGSPSPPLSPKKELHVKAGPSPVPSHVNEKPHVRDGHSPPSPPLPPSPPLKAEQPSRFKPPPPPPPPHLSTGAASPAIAPAAPPAPPPPARAASPAIAPPAPPAPPPPANASTQKSPPVPPPPIPLGKEGLKPGGAFPMSLKVPGTAGPGRVLIGSKNNSKKLKPLHWMKLSRAVQGSLWDETQKSGEASKAPEIDISELENLFSAAAPSSGLAKKSNVQSSAKPKSEKVQLIDHRRAYNCEIMLSQVKVPLHDLMTSVLELEESALDTDQVENLIKFCPTKEEMEVIKSYDGEKEKLGRCEQFFVELMKVPRVESKLRVFSFKIQFHSQVSDLKNSLNAVNSAAEEIRNSVKLKRIMQTILTLGNALNQGTARGSAIGFRLDTLLKLTETRARNNKMTLMHYLCKVLDDKLPEVLDFSKDLANLEPAAKIQLKFLAEEMQTINKGLEKVVQELSTSENDGPISETFRKKLKAFLCSAEAEVRSLASLYSAVGRNVDALILYFGEDPSRCPFEQVVTTLLNFTGMFNKAHEENCKQQELEMKKTAESEKKKCESERILPTAIPTGNVN 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04752 1082 SUPERFAMILY Formin homology 2 domain (FH2 domain) 742 1060 - -
Tsu04g04752 1082 Pfam Formin Homology 2 Domain 672 1040 IPR015425 -
Tsu04g04752 1082 MobiDBLite consensus disorder prediction 439 485 - -
Tsu04g04752 1082 MobiDBLite consensus disorder prediction 593 642 - -
Tsu04g04752 1082 Gene3D Formin, FH2 domain 669 1052 IPR042201 -
Tsu04g04752 1082 MobiDBLite consensus disorder prediction 395 651 - -
Tsu04g04752 1082 Pfam C2 domain of PTEN tumour-suppressor protein 198 334 IPR014020 -
Tsu04g04752 1082 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 199 335 IPR035892 -
Tsu04g04752 1082 ProSiteProfiles Formin homology-2 (FH2) domain profile. 667 1066 IPR015425 -
Tsu04g04752 1082 SMART PTEN_C2_2 195 334 IPR014020 -
Tsu04g04752 1082 Gene3D Protein tyrosine phosphatase superfamily 13 196 IPR029021 -
Tsu04g04752 1082 ProSiteProfiles C2 tensin-type domain profile. 197 335 IPR014020 -
Tsu04g04752 1082 MobiDBLite consensus disorder prediction 395 420 - -
Tsu04g04752 1082 MobiDBLite consensus disorder prediction 551 585 - -
Tsu04g04752 1082 Gene3D - 197 338 - -
Tsu04g04752 1082 MobiDBLite consensus disorder prediction 490 508 - -
Tsu04g04752 1082 SMART it6_source 667 1082 IPR015425 -
Tsu04g04752 1082 PANTHER FORMIN-J 1 1066 - -
Tsu04g04752 1082 Coils Coil 845 865 - -
Tsu04g04752 1082 Coils Coil 1041 1069 - -
Tsu04g04752 1082 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 10 185 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04752 Tsu-Chr4 54817522 54827459 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04752 1 439 Protein tyrosine phosphatase (PTP) family AT5G58160 61.818 0.0 601
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04752 - - ahf:112723424 1464.51