Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04746 ATGGGTTTAGGAGTATTTGGATCTGTTCTTGTTTTAACAATTTTGTTCAAGCATTTAGCTTCTCAGCAACCAAACACTGATGAATTTTATGTATCTGAGTTTTTGAAGAAAATGGGTTTAACATCATcctcaaaagattacaattttTCATCTTCTGTTTGTTCATGGAAAGGTGTTTTCTGTGATTCAAATAATGAACATGTTGTTAATTTAACTTCTCTCAAAACCCTTAACCTTTCTTCCAATCAAATTTCAGGTTCATTGACTAACAacattggaaactttggtttACTTGAAAACTTTGACTTGTCAAAAAACAATTTCACTGATGAAATTCCTGAAGCTTTGAGTTCACTTGTGAATTTGAAGGTTCTTAAACTTGACCACAACATGTTTGTTAGAAGTATTCCTTCAGGAATTCTCAAGTGTGAGTCTCTAGTTTCAGTTGATCTTTCATCAAATCAACTGAATGGAACACTTCCACATGGTTTTGGTGATGCTTTTCCTAAGCTTAGGACTGTGAATCTTGCTGAGAATAATATCGATGGAGGTGTCTCGAATTTTTCAGGGTTAAAGTCCATTGTGAGTCTTAATATATCAGGAAATTCATTTCAGGGTTCTATTATTGATGTCTTTGAGTTAAAGTTGGAGGTTTTGGACCTTAGCAGAAACCAATTTCAAGGTCACATTTCTCAGGTTGTTGAAGTTTCTACTTCAAAAACTGGAAAGCATGGACATGCAAAGTGTCACTTTGTTGCGATTGATATCTTCAATGGCAAAAAGCTTGAAGATATTGTTCCTTCATCTCACAATTGTGATGTTCCTCATGTGAATCGTACTGATTATCAGCTCATTGATATCTCTGAAGATGGTTTTGTGAGTCTGTTGACTGATAATGGAAGTACCAAGGATGATCTGAAGCTTCCCACTGATGATTCACTGCTTACTCAGATTAAAGATGGATTTGCTGAAGGAAAAGATCTCGTGGTTTCTGTCATGTCTGCAATGGGAGAAGAACAGATTTGTGCCCTGAAGGACATTGgtcctaaaaattaa 1056 0.3409 MGLGVFGSVLVLTILFKHLASQQPNTDEFYVSEFLKKMGLTSSSKDYNFSSSVCSWKGVFCDSNNEHVVNLTSLKTLNLSSNQISGSLTNNIGNFGLLENFDLSKNNFTDEIPEALSSLVNLKVLKLDHNMFVRSIPSGILKCESLVSVDLSSNQLNGTLPHGFGDAFPKLRTVNLAENNIDGGVSNFSGLKSIVSLNISGNSFQGSIIDVFELKLEVLDLSRNQFQGHISQVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDDSLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04746 351 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 241 248 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Tsu04g04746 351 SUPERFAMILY L domain-like 48 231 - -
Tsu04g04746 351 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 276 345 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Tsu04g04746 351 Pfam Leucine Rich repeat 71 86 IPR001611 GO:0005515
Tsu04g04746 351 Gene3D - 221 276 IPR014722 -
Tsu04g04746 351 TIGRFAM eIF_5A: translation elongation factor IF5A 217 344 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Tsu04g04746 351 CDD S1_eIF5A 277 347 - -
Tsu04g04746 351 Pfam Leucine rich repeat 145 203 IPR001611 GO:0005515
Tsu04g04746 351 SMART eIF_5a_2 276 345 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Tsu04g04746 351 SUPERFAMILY Nucleic acid-binding proteins 277 347 IPR012340 -
Tsu04g04746 351 Gene3D - 277 350 IPR012340 -
Tsu04g04746 351 Gene3D Ribonuclease Inhibitor 32 187 IPR032675 -
Tsu04g04746 351 SMART LRR_typ_2 71 95 IPR003591 -
Tsu04g04746 351 SMART LRR_typ_2 119 143 IPR003591 -
Tsu04g04746 351 SUPERFAMILY Translation proteins SH3-like domain 227 284 IPR008991 -
Tsu04g04746 351 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 232 347 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Tsu04g04746 351 PANTHER BNAA07G09420D PROTEIN 232 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04746 Tsu-Chr4 54750530 54759003 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04746 226 350 Eukaryotic Initiation Factors Gene Family AT1G69410 85.600 2.30e-75 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04746 K03263 - gmx:100787157 342.428