Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04740 ATGTTTGATGGCGGTGATTACAAGTCACAGTACATGGGCGGCCAGCGAGAAAATTCTTTTAGGTGGGATGTCTTGGATTCTAGACTATCATCATCTTCTGATGTCAGAGTTGCCAAATCTGGATTTAATATTGATAAATTAAGCCATGGTGGTCATGGAAGCAACACAACCTCTAGGTCTTTTAAAAAAGGAATGAAGAGGGGGTCTGAAGGACTGAAGTTAATTGGTCGATCACTTGGACTTGGGGTATCTAGGGCTGTGTTTCCAGAAGATCTTAAAGTGTCTGAAAAGAAGATATTTGATCCCCAAGacaaatttttactcttttggaataagttaTTTGTTATCTCATGCATTTTATCCGTGTCTGTGGATCCACTGTTTTTTTATCTCCCTGTCATCAATGATCAATTACACTGTCTGGGTATAGATCGAAAGTTGGCGACAATAGTCACCACCTTGAGGACAATCATTGATGCTTTCTATCTTATACACATGGCTCTCCAATTTCGTACTGCTTACATTGCTCCATCATCTCGTGTCTTTGGGCGGGGTGAGCTTGTGATAGATTCAGTGCAGATAGCCAAGCGATACTTGCGACGATATTTCATCATCGATTTCCTATCTGTGTTGCCGGTACCACAGATTGTTGTTTGGAGATTTCTTCAGAGGTCAAAAAGTTCAGATGTACTAGCGACAAAGCAAGCCTTGCTGTTCATTATCTTGCTTCAGTATGTTCCTAGATTTCTTCGAATGGTACCGCTAACTTCAGAACTTAAGAGAACAGCTGGTGTCTTTGCTGAAACTGCATGGGCAGGTGCTGCATATTATTTGATGTTATACATGCTTGCCAGTCATATAGTTGGTTCTTTTTGGTACTTGTTAGCTATTGAACGCAATGACTCATGCTGGCAGAATGCTTGCAGTGACAAGGACAATGGGTGCAAAAAAAACTACCTGTATTGTGAGAACCAGCACACGGAAGGTTATAGTGCCTGGCAAAATAAAAGCAAAGCTATTTTTAAGTCAAAGTGCTCTGTAGATGATAAGCCTCCACCTTTTGATTATGGTATTTTTACGCAAGCCTTGTCATCTGGTATCATTTCATCTAAGACGTTCATCTCGAAGTATTGTTATTGTTTATGGTGGGGTCTCCAAAATTTAAGCACCCTTGGTCAGGGGCTTCAGACTAGCACTTATCCTGGGGAGGTTATCTTTTCAATAGCACTTGCCATAGCAGGCCTCATCCTCTTTGCACTTCTGATTGGCAACATGCAGACATATCTTCAATCTCTTACCCTTAGGCTTGAGGAAATGAGAGTCAAAAGGCGTGATTCAGAACAGTGGATGCATCATCGCTTGCTCCCAAAAGAGCTTAGAGAGCGTGTGAGACGGTATGATCAATATAAGTGGTTGGCAACACGTGGTGTAGATGAAGATATTTTAGTTCAGAGTCTACCAAAGGATCTTCGAAGAGATATTAAGCGTCATCTTTGTTTGGCTTTAGTGAGGAGGGTTCCACTGTTTGAGAGTATGGATGAGAGATTGCTTGATGCCATATGTGAGAGACTGAAACCATGTTTATTTACAGAGAGTACTTATATTGTTCGGGAAGGAGATCCAGTCGATGAGATGCTTTTCATCATACGGGGACGCCTTGAGAGTGTAACCACAGATGGTGGGAGGAGTGGCTTTTTCAACCGCGGTTTTCTAAAAGAGGCTGACTTCTGTGGGGAGGAGCTTTTAACCTGGGCCCTAGACCCCAAATCTGGTTCTAATCTTCCATCTTCTACTCGAACAGTAAAGGCGTTAACAGAGGTTGAGACTTTTGCCTTAACTGCCGATGAGCTGAAATTTGTTGCCAGTCAGTTTAGGCGTCTTCACAGTAGGCAGGTTCAACACACTTTTCGTTTCTACTCTCAGCAATGGAGAACTTGGGCTGCATGCTTTATTCAAGCAGCATGGCGTCGATattgcaaaaagaaaattatgaagCTTCgtcaaaaggaagaagaaaatgagTCAGAAGGAACTCATGGCAACACCAGTGGTAGTTCCTCCAGCCTTGGTGCCGCCTTATTAGTCTCAAAGTTTGCCGCGCACACTCTCCGTGGTGTACACCGCAATCGACTTGCCAAAACTGCTAGGGAATTGGTGAAATTACAGAAACCCCCTGAGCCTGACTTTACAGCAGATGATGCAGACTAA 2208 0.4185 MFDGGDYKSQYMGGQRENSFRWDVLDSRLSSSSDVRVAKSGFNIDKLSHGGHGSNTTSRSFKKGMKRGSEGLKLIGRSLGLGVSRAVFPEDLKVSEKKIFDPQDKFLLFWNKLFVISCILSVSVDPLFFYLPVINDQLHCLGIDRKLATIVTTLRTIIDAFYLIHMALQFRTAYIAPSSRVFGRGELVIDSVQIAKRYLRRYFIIDFLSVLPVPQIVVWRFLQRSKSSDVLATKQALLFIILLQYVPRFLRMVPLTSELKRTAGVFAETAWAGAAYYLMLYMLASHIVGSFWYLLAIERNDSCWQNACSDKDNGCKKNYLYCENQHTEGYSAWQNKSKAIFKSKCSVDDKPPPFDYGIFTQALSSGIISSKTFISKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAIAGLILFALLIGNMQTYLQSLTLRLEEMRVKRRDSEQWMHHRLLPKELRERVRRYDQYKWLATRGVDEDILVQSLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTESTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEADFCGEELLTWALDPKSGSNLPSSTRTVKALTEVETFALTADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYCKKKIMKLRQKEEENESEGTHGNTSGSSSSLGAALLVSKFAAHTLRGVHRNRLAKTARELVKLQKPPEPDFTADDAD 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04740 735 CDD CAP_ED 508 639 IPR000595 -
Tsu04g04740 735 PANTHER NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED 17 732 - -
Tsu04g04740 735 Gene3D Jelly Rolls 506 626 IPR014710 -
Tsu04g04740 735 SUPERFAMILY Voltage-gated potassium channels 101 430 - -
Tsu04g04740 735 SUPERFAMILY cAMP-binding domain-like 437 628 IPR018490 -
Tsu04g04740 735 Pfam Ion transport protein 109 435 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Tsu04g04740 735 Pfam Cyclic nucleotide-binding domain 530 619 IPR000595 -
Tsu04g04740 735 SMART cnmp_10 508 639 IPR000595 -
Tsu04g04740 735 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 17 732 - -
Tsu04g04740 735 Gene3D Helix hairpin bin 436 499 - -
Tsu04g04740 735 ProSiteProfiles cAMP/cGMP binding motif profile. 508 638 IPR000595 -
Tsu04g04740 735 Gene3D - 112 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04740 Tsu-Chr4 54710759 54716960 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04740 12 732 Ion Channels AT5G57940 77.040 0.0 1142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04740 K05391 - gmx:100784327 1263.06