Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04728 ATGCAGCAAGGTGATCAAACGGTTCTTAGCTTGAGGCCTGGTGGTGGTCGAGGAAACAGGCTTCTCGCTCCTAGATTTGATTCCAACTCATCGGTTAATCCTACTTTTGGTTCTTTTTCATCTGATCTTTCTCTGCTTCGTCCTCATGGTGCTGCTTCTTCCAACTTTGCTTTTAAGGTTGGAGATTCGCAGTTTGAGGGTCGTGAGCGTGTGCGATATACCAAAGAAGAGCTTTTAAAGATTAGAGAGAATGTCGAGGAGACCCCTGATGATATTTTAAAGCTCAGACGTGACATTGATGCTGAACTTTTTGGTGAAGATCAAAGTTGGGGTCGTGTAGAAAACAACCCCCCAGCTCAAATTCAAAATCGATATTCTGAACCAGATAACCGTGATTGGCGTGGCCGAACTGCGCAACCTCCGGCTAATGCAGATGAAAGGTCTTGGGATAATCTCAAGGACAGAGAACCTGGCAATACTATTCAGGTTAATCGTCAAGATCAACAGTTCCCGCGTAATAACCAAGGGGGAGGATCTGCTCCTGCTCTAGTCAAGGCTGAGGTACCATGGTCTGCTAGAAGGGGAAGTCTCTCTGACAAGGATCGTGTCTTAAAGACTGTTAAAGGGATACTAAACAAGTTGACTCCTGAgaaatttgatcttctgaagggTCAGTTGATCGATTCTGGAATTACATCAGCTGATATATTGAAGGGAGTCATTTCATTGATATTTGATAAGGCTGTGCTAGAACCAACATTCTGTCCCATGTATGCTCAGCTGTGTTCCGATCTTAATGAAAAGCTGCCTCCGTTCCCATCTGAAGAACCTGATGGGAAAGAAATAACTTTTAAGAGAGTACTCTTGAATAACTGCCAGGAAGCTTTTGAAGGTGCTGGTAAACTTAGGGAAGAATTGGCGCAGATGACTTCCCCTGAGCAGGAGTCAGAGCGACGTGACAAGGAAAGACTTGTTAAAATTCGTACCCTAGGAAACATTCGCTTAATCGGTGAGCTGCTGAAGCAAAAAATGGTTCCTGAAAAGATTGTCCATCACATTGTTCAGGAGCTTTTAGGACCATCTGACAGCAAGGTCTGTCCTGCTGAGGAAAATGTTGAAGccatatgtcattttttcaacaCTATTGGCAAGCAGCTTGATGAAAGTCCAAAATCACGACGTATAAATGATATTTACTTTCAACGGTTGAAAGAGTTGAGCACCAATCCTCAACTTGTACCGCGGATGAGATTCATGGTTCGTGATGTTATAGATTTGCGTGCTAGTAACTGGATTCCAAGACGGGAAGAGGTTAAGGCCAAAACCATCAGTGAAATCCATAATGAGGCAGAAAAGAATCTTGGGTTGCGTCCAGGCGCCACTGCAGGTATGAGAAACACCCGTGTTACTGGTGTTCAAGGTAATACTGGTGTTGGGGGCTTTCCCATTGCCCGACCTGGCACAGGAGGTATAATGCCTGGGATGCCGGGTGCCAGGAAGATGCCTGGGATGCCTGGTATTGATAATGATAACTGGGAGGTGCCTAGAACTAGATCTATGCCAAGGGGAGACATGTCCGTCACACAAGTTGGAGGACGTGGCCAGTCTCCTTTCATTTCCAAGCCATCAGCTCTAAACTCAAAGTTACTGCCTCAAGGTAGTAGTGGTCTTATAAGTGGGAAGAATAGTGCCCTGGTGCACGGAGGTGGCACTGCTCGTCCATCAGACCTTGCTTCAGGTACTGAGCCTACACCTCAAATCCCTTCCCCTGTTAAACCTGTTTCTGCCGTTCCTGAGAAGCCACAGGCACCAGCTTCGGAATTGAATATTGATGATCTTCACCGCAAAACTGTCTCTCTTCTGGAAGAATATTTCAATGTCCGGATTTTGGACGAGGCATTGCAGTGTGTGGAGGAGCTAAAAGCTCCAACCTATTACCCAGAGGTTGTCAAGGAAGCCATTTCCCTCGGACTAGAAAAAAATCCGCCATGTGTTGAACCTGTTGCCAAACTTATTGAGTATCTGTTTACCAAGAAGATTCTCTCAGCTAGAGACATAGGGACCGGATGTTTGTTATTTGCTTCTTTGCTcgatgatattattttagatttacCACCTAAAGCACCAAGTAACTTTGGTGAGATGATAGGGAAACTAGTTTCGGCTGGGGGTTTAGACTTCAAGGTGGTGAGAGAGATTCTTAAGAAGGTGAGTGATGACTACTTCCAGAAAGTAATATTCAACTCTGTAGTGCAGTCAACCGGGCAAGCTGTGTTGGATTCTCAAGCATCTGATATTGAGGCCTGCCAGGCTCTGTTCGAGTGA 2325 0.4439 MQQGDQTVLSLRPGGGRGNRLLAPRFDSNSSVNPTFGSFSSDLSLLRPHGAASSNFAFKVGDSQFEGRERVRYTKEELLKIRENVEETPDDILKLRRDIDAELFGEDQSWGRVENNPPAQIQNRYSEPDNRDWRGRTAQPPANADERSWDNLKDREPGNTIQVNRQDQQFPRNNQGGGSAPALVKAEVPWSARRGSLSDKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKGVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSEEPDGKEITFKRVLLNNCQEAFEGAGKLREELAQMTSPEQESERRDKERLVKIRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPSDSKVCPAEENVEAICHFFNTIGKQLDESPKSRRINDIYFQRLKELSTNPQLVPRMRFMVRDVIDLRASNWIPRREEVKAKTISEIHNEAEKNLGLRPGATAGMRNTRVTGVQGNTGVGGFPIARPGTGGIMPGMPGARKMPGMPGIDNDNWEVPRTRSMPRGDMSVTQVGGRGQSPFISKPSALNSKLLPQGSSGLISGKNSALVHGGGTARPSDLASGTEPTPQIPSPVKPVSAVPEKPQAPASELNIDDLHRKTVSLLEEYFNVRILDEALQCVEELKAPTYYPEVVKEAISLGLEKNPPCVEPVAKLIEYLFTKKILSARDIGTGCLLFASLLDDIILDLPPKAPSNFGEMIGKLVSAGGLDFKVVREILKKVSDDYFQKVIFNSVVQSTGQAVLDSQASDIEACQALFE 774
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04728 774 SMART ma3_7 613 726 IPR003891 -
Tsu04g04728 774 SMART if4_15 204 430 IPR003890 GO:0003723|GO:0005515
Tsu04g04728 774 ProSiteProfiles MI domain profile. 612 735 IPR003891 -
Tsu04g04728 774 Pfam MA3 domain 614 726 IPR003891 -
Tsu04g04728 774 PANTHER MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN ISOFORM 2 3 773 - -
Tsu04g04728 774 Pfam MIF4G domain 204 430 IPR003890 GO:0003723|GO:0005515
Tsu04g04728 774 Gene3D - 606 768 - -
Tsu04g04728 774 SUPERFAMILY ARM repeat 607 753 IPR016024 -
Tsu04g04728 774 MobiDBLite consensus disorder prediction 513 539 - -
Tsu04g04728 774 MobiDBLite consensus disorder prediction 469 488 - -
Tsu04g04728 774 SUPERFAMILY ARM repeat 198 432 IPR016024 -
Tsu04g04728 774 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 3 773 IPR045208 GO:0003743
Tsu04g04728 774 MobiDBLite consensus disorder prediction 562 603 - -
Tsu04g04728 774 MobiDBLite consensus disorder prediction 1 26 - -
Tsu04g04728 774 Gene3D - 196 431 - -
Tsu04g04728 774 MobiDBLite consensus disorder prediction 108 158 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tsu04g04728 Tsu-Chr4 54640657 54648458 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04728 1 772 Eukaryotic Initiation Factors Gene Family AT5G57870 63.071 0.0 940
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04728 K03260 - gmx:100781275 1197.19
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04728 04 54640657 54648458 Tsu04g04728 04 54640657 54648458 ECH