Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04723 ATGGAAGCCAGCGCTGGATTAGTCGCTGGTTCGCACAACCGTAATGAGCTTGTTGTCATTCATGGCCATGAAGAGCATAAGCCTTTGAAGAATTTGGATGGTCAAGTGTGTGAGATATGTGGTGATGATGTTGGACTCACTGTGGATGGGGACTTGTTTGTGGCATGTAACGAGTGCGGTTTTCCGGTGTGCCGACCATGCTATGAATATGAAAGAAGGGAAGGGAGACAACTTTGTCCTCAGTGCAAGACCAGATACAAGCGTCTCAAAGGGAGCCCTCGGGTTGAGGGGGATGATGATGAGGAGGATGTGGATGATATTGAACATGAATTTAACATTGAAGACAAAATTAACCATCATGATCATTCTGCCGAGGCTTTGCTGCATGGGAAGATGAGCTATGGAAGAGGTCCTGAAGATGATGAAAACGCACACTTCCCAGCTGTTATTGCCGGCGGTCGCTCTCGGAATGTGAGTGGTGAGTTCCCAATATCATCTCATGGTTATGGGGACCAGATGTTATCTTCTACGCTGCATAAAAGAGTTCATCCATATTCCGCTTCTGATCCTCGAAGTGCAGGATGGGATGAAAGAAGAGATGACGGAACATATGATAGAACGGATGACTGGAAATTGCAGCAAGGAAATTTGGGACCTGAACCTGATGAAGATCTAGATGCAGACATGTCAGATGAAGCAAGGCAACCACTGTCAAGGAAGGTACCAATAGCATCTAGCAAAATCAATCCATATAGGATGGTGATTGTGGCACGGCTTGTTATTCTTGCCTTCTTCCTCCGATACAGACTTATGAACCCAGTACACGATGCAATGGGGCTATGGCTAACTTCTATTATATGTGAAATCTGGTTTGCTATTTCTTGGATCCTTGATCAGTTTCCCAAATGGTATCCTATTGATCGAGAAACCTACCTTGATCGCCTTTCAATCAGGTATGAGCGTGAAGGCGAACCCAATATGCTTGCTCCTGTAGATGTGTTTGTCAGTACTGTGGACCCCTTGAAGGAACCTCCTCTGAATACAGCAAACACAGTTCTTTCAATCTTGGCAATGGACTACCCCATTGATAAGATATCATGCTACATTTCTGATGATGGAGCTTCAATGTGCACATTTGAAGCCCTATCAGAAACGGCAGAGTTTGCTAGGAAGTGGGTGCCATTCTGTAAGAAATTTTTGATAGAACCTCGAGCACCAGAGAATTACTTTTCTGAGAAAATTGACTATCTAAAGGACAAGGTGCAGCCCACTTTTGTAAAAGAACGTCGATCCATGAAGAGAGAATATGAAGAGTTTAAGGTAAGGATCAATGCACTTGTGGCAAAAGCCCAGAAGGTTCCTGCAGGAGGGTGGATTATGCAGGATGGGACACCATGGCCAGGAAACAATGGTAAGGATCATCCTGGTATGATTCAAGTCTTTCTTGGTCACAGCGGAGGTCATGATAGTGAAGGAAACCAGCTTCCTCGCCTTGTTTATGTATCCAGAGAGAAAAGGCCTGGATTTCAACACCACAAGAAAGCCGGTGCCATGAATGCTCTGGTTCGAGTCTCCGCTGTACTGACAAATGCTCCTTTCATGCTGAACTTGGATTGTGATCATTATATCAATAATAGCAAGGCTGTCCGAGAGGCCATGTGCTTCTTGATGGACCCCCAAACAGGGAAGAAGGTTTGCTATGTCCAGTTTCCTCAAAGATTCGATGGTATTGATGCACACGATCGATATGCCAATAGGAACACAGTTTTCTTTGATATTAACATGAAAGGTCTAGATGGTATTCAGGGTCCTGTATATGTCGGCACAGGTTGTGTATTTAGAAGGCAGGCTTTATATGGATATAGTCCTCCCAAGGGTCCCAAGCGTCCAAAAATGGTAAGCTGTGACTGCTGCCCATGTTTTGGAAGGCGCAAGAAGGCTAAGCATGCAATGAACGATGCAAATGGAGAGGTTGCAAGCCTAAGAGGAATGGATGATGACAAAGAATTAATGATGTCCCAGATGAATTTTGAGAAGAGATTTGGGCAGTCATCAATATTTGTGACTTCAACCTTGATGGAAGAGGGTGGTGTACCTCCCTCCTCGAGTCCAGCAAGCCAGCTGAAAGAAGCTATTCATGTAATTAGTTGTGGATATGAAGATAAAACTGAATGGGGAATTGAGCTTGGTTGGATTTATGGGTCTATTACAGAGGATATTCTAACAGGCTTTAAGATGCACTGCCGTGGTTGGAGATCCATTTACTGTATGCCAAAGAGAGTAGCATTCAAGGGTACTGCTCCTATCAACTTGTCAGATAGACTCAACCAGGTGCTTCGTTGGGCCCTTGGTTCCATTGAGATCTTCTTCAGTCATCATTGCCCTTTATGGTATGGACACAAGGAAGGGAAACTGAAGTGGCTGGAGCGATTTGCCTATGCAAACACAACCGTCTACCCCTTCACCTCCATACCTCTAGTTGCCTACTGTATTCTTCCTGCTGTCTGCTTACTCACTGACAAATTCATCATGCCACCGATAAGCACTTTCGCTAGTTTGTACTTTGTTGCTCTCTTCTCTTCAATCATGGCAACAGGCATTCTTGAGTTGAAATGGAGTGGAGTCAGCATTGAGGAATGGTGGAGAAATGAGCAATTCTGGGTCATTGGTGGTGTATCAGCACATCTCTTTGCTGTCATACAAGGTCTTCTGAAGGTTCTTGCTGGAATTGACACCAACTTCACTGTTACATCCAAGGCAACAGATGATGAGGAATTTGGAGAATTATACGCCATTAAGTGGACTACTCTTCTAATTCCTCCAACTACTATCTTAATAATCAATATTGTTGGGGTTGTTGCTGGAATCTCAGATGCCataaacaatgggtaccaatcATGGGGACCTCTATTTGGAAaactcttcttttctttctggGTGATTGTCCATCTGTATCCATTCCTTAAAGGTTTGATGGGTCGGCAAAACCGCACACCCACCATTGTTGTTATATGGTCAGTGTTGTTGGCTTCCATTTTCTCCTTGCTATGGGTAAGAATTGACCCATTTGTGCTCAAAACTAAGGGACCTGATACCAAGCTATGTGGAATCAACTGTTAA 3120 0.4369 MEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGDDVGLTVDGDLFVACNECGFPVCRPCYEYERREGRQLCPQCKTRYKRLKGSPRVEGDDDEEDVDDIEHEFNIEDKINHHDHSAEALLHGKMSYGRGPEDDENAHFPAVIAGGRSRNVSGEFPISSHGYGDQMLSSTLHKRVHPYSASDPRSAGWDERRDDGTYDRTDDWKLQQGNLGPEPDEDLDADMSDEARQPLSRKVPIASSKINPYRMVIVARLVILAFFLRYRLMNPVHDAMGLWLTSIICEIWFAISWILDQFPKWYPIDRETYLDRLSIRYEREGEPNMLAPVDVFVSTVDPLKEPPLNTANTVLSILAMDYPIDKISCYISDDGASMCTFEALSETAEFARKWVPFCKKFLIEPRAPENYFSEKIDYLKDKVQPTFVKERRSMKREYEEFKVRINALVAKAQKVPAGGWIMQDGTPWPGNNGKDHPGMIQVFLGHSGGHDSEGNQLPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDPQTGKKVCYVQFPQRFDGIDAHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYSPPKGPKRPKMVSCDCCPCFGRRKKAKHAMNDANGEVASLRGMDDDKELMMSQMNFEKRFGQSSIFVTSTLMEEGGVPPSSSPASQLKEAIHVISCGYEDKTEWGIELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRVAFKGTAPINLSDRLNQVLRWALGSIEIFFSHHCPLWYGHKEGKLKWLERFAYANTTVYPFTSIPLVAYCILPAVCLLTDKFIMPPISTFASLYFVALFSSIMATGILELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKATDDEEFGELYAIKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDTKLCGINC 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04723 1039 MobiDBLite consensus disorder prediction 182 228 - -
Tsu04g04723 1039 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 480 622 IPR029044 -
Tsu04g04723 1039 SUPERFAMILY RING/U-box 21 107 - -
Tsu04g04723 1039 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Tsu04g04723 1039 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1039 - -
Tsu04g04723 1039 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Tsu04g04723 1039 Coils Coil 429 449 - -
Tsu04g04723 1039 Pfam Cellulose synthase 331 1033 IPR005150 GO:0016020|GO:0016760|GO:0030244
Tsu04g04723 1039 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Tsu04g04723 1039 SUPERFAMILY Nucleotide-diphospho-sugar transferases 345 832 IPR029044 -
Tsu04g04723 1039 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] 1 1039 - -
Tsu04g04723 1039 MobiDBLite consensus disorder prediction 192 208 - -
Tsu04g04723 1039 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 109 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04723 Tsu-Chr4 54611672 54617050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04723 1 1039 Cell Wall Biosynthesis AT5G17420 85.000 0.0 1823
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04723 K10999 - gmx:100779834 1991.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04723 04 54611672 54617050 Tsu04g04723 04 54611672 54617050 ECH
Tsu04g04723 04 54611672 54617050 Tsu03g02649 03 33440888 33446946 PCT