Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04712 ATGGCAACAAGGAATCGCACTTTGCTTTTCCGAAAATACAGAGATGCATTGAAGAGTGTTCGTGCTCCGTCAGCTTCTTCTCCACCGTCTAAATCTTCCGCCGGTGGTCCTGTCATTGAATTGGTCAGCACCACGCTTCTCAATCAAAATCGCTCTTATGCTCCTCTTAGTACCGAAGATCCCGGTAATTCAAGTAAGGGTATAAATCCAATTACCGTGGGGCTACCTCCAGCGTGGGTGGATGTATCTGAAGAAATATCAGCGAATGTGCAACGTGCACGCACAAAAATGGCAGAGTTGTCCAAAGCTCATTCAGAGGCCTTAATGCCATCGTTTGTAGATGGTAAGGATAAGCAACATGCTATTGAGTCTCTAACACATGAGATAACTGACTTGATAAAGAGATCAGAGAAGAGACTGCGGAGACTTGCTGCTACAGGGCCTTCTGAGGATTCCAATGTCAGGAAAAATGTGCAGCGTTCTCTTGCTACTGACCTTCAGAGCCTCTCTGTAGAGCTTCGTAAAAAACAATCAAGTTATTTGAAGCGCCTCAGACTGCAAAAAGAGGATCAAGATGGGGTTGATCTAGAGATCAACATGAATGGAAGTAAATCTAGATATGAAGATGTTGACTTGGACAATATgATATTTAACGAACATCAGATGGCCAagctaaaaaaaagtgaagCTTTCACagttgaaagagaaaaagagataCAACAGGTTGTGGAATCTGTGAACGAGCTTGCTCAGATTATGAAGGATTTATCAGTACTAGTCATAGACCAGGGAACCATTGTTGATAGAATAGATTACAACATTCAGAATGTGGCAACCACAGTTGAGGATGGCCTCAAACAGCTGCAGAAGGCAGAGAGAACTCAGAAAAAGGGAGGCATGGTAATGTGTGCGTCGGTGCTTCTTATCATGTGCTTTGTTATGTTGGTTCTCCTAGTAATTAAGGAAATTATTTTGTGA 978 0.4131 MATRNRTLLFRKYRDALKSVRAPSASSPPSKSSAGGPVIELVSTTLLNQNRSYAPLSTEDPGNSSKGINPITVGLPPAWVDVSEEISANVQRARTKMAELSKAHSEALMPSFVDGKDKQHAIESLTHEITDLIKRSEKRLRRLAATGPSEDSNVRKNVQRSLATDLQSLSVELRKKQSSYLKRLRLQKEDQDGVDLEINMNGSKSRYEDVDLDNMIFNEHQMAKLKKSEAFTVEREKEIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVEDGLKQLQKAERTQKKGGMVMCASVLLIMCFVMLVLLVIKEIIL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04712 325 CDD SNARE_syntaxin16 234 290 - -
Tsu04g04712 325 Coils Coil 83 103 - -
Tsu04g04712 325 PANTHER SYNTAXIN 1 320 IPR045242 -
Tsu04g04712 325 ProSitePatterns Syntaxin / epimorphin family signature. 235 274 IPR006012 GO:0005484|GO:0006886|GO:0016020
Tsu04g04712 325 SMART tSNARE_6 224 291 IPR000727 -
Tsu04g04712 325 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 229 291 IPR000727 -
Tsu04g04712 325 PANTHER TARGET SNARE COILED-COIL-LIKE DOMAIN-CONTAINING PROTEIN-RELATED 1 320 - -
Tsu04g04712 325 SUPERFAMILY t-snare proteins 75 284 IPR010989 GO:0016020|GO:0016192
Tsu04g04712 325 SMART SynN_4 70 185 IPR006011 GO:0016020
Tsu04g04712 325 Pfam SNARE domain 265 317 IPR000727 -
Tsu04g04712 325 Gene3D - 76 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04712 Tsu-Chr4 54554835 54560829 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04712 1 325 SNARE and Associated Proteins AT5G26980 75.535 1.64e-178 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04712 K08489 - gmx:100796741 533.872