Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04708 ATGATGtgtttttttaaacaacttaCAATGTTTCTATTCTATTTTCTTATCTTTGCTCATTCTAGAGTTCTTGAAAAGGAACATGTTGGCTTTATGAATGATAAAGCTTCACTTGTTTCATTCATGTCATGCATTATTTCGGACCCCGAAAACGCACTAGAGAGCTGGAAATCAAACGTTGTTCATGTTTGTGATTGGTCAGGTGTTAAATGCAACAATGCAAGTCATAATAAAAGGATCATAGAGCTTGATCTAAGTGGAAAATCACTAGGAGGAACTATTTCCCCTTCTCTTGCTAACCTCTCTTTGTTGCAAATTCTTGACCTTTCTGGAAATCTTTTGGTTGGTCACATTCCAAGAGAATTAGGCTCTTTAGTTCATCTTGAACAACTTAGTTTATCTTGGAATTTTCTTCAAGGGAACATTCCTTTAGAGTTTGGTTCATTACACAACTTGTATTACCTTGACTTGGGAAGCAATCAACTTGAGGGAGAGATTCCTCCATCACTTTTATGTAATGGTACTTCATTATTGAGTTATTTAGACCTCTCTAATAATTCATTAGTAGGAAAAATTCCATTAAACACTAATAGGTGTATCCTTAAAGATCTTAAGTTCCTCTTACTTTGGTCTAACAAACTTGTAGGCCAAGTTCCTTTGGCTCTTTCAAATTCTACTAAGCTTAAATGGCTTGATTTGGAGTCCAATATGTTGAGTGGAGAACTTCCATCTAAGATTATATGTAATTTTCCACAATTACAATTCCTCTACTTATCATATAACAATTTTGTTAGCCATGATAGTAACACTAACCTTGAACCTTTCTTTGCTTCTTTGATGAATTCATCTAACTTTCAAGAACTCGAATTGGCCGGAAACAGCCTCGGTGGGAAGCTACCTCATATTATTGGCAATCTTCCTACAAGCATGCAACATATTCACCTAGAAGAGAATCTCATACATGGATTTATACCTCCCCACATTTCCAATCTTGTCAACCTGACTTTCTTAAAGTTGTCTAGTAACCGAATAAACGGAACAATCCCTCACAGCCTATGCAAGATTGTTAGGCTAGAGAGAATTTATTTGTCAGATAATTATCTATCTGGTGAAATTCCTTCAACTCTCGGCGACATCAAGCATCTTGGACTTCTTGACTTGTCAAGAAACAAGCTTTTTGGTTCGATACCGGATAGTTTCGCAAACCTCCCTCAGTTAAGAAGGCTTTTACTTTATGACAACAACCTTTCTGGAATAATTCCACCAAGTCTAGGAAAATGTGTCAATTTGGAGATTCTAGACTTGTCTCACAACAAGATCACAGGGATGATTCCTTCAGAAGTTGCAGCATTAACTAGCTTGAAACTGTACTTGAATTTATCAAACAATGAGTTACAAGGTCCTTTACCATTAGAACTAAGCAAAATGGACATGGTGCTAGCTATTGATATATCTATGAATAATCTCTCTGGTAGAGTTCCACCACAActtgaaaattgcatagcattagaATATCTCAATCTTTCTGGTAATTCCTTAGAAGGTCCCTTACCTAATTCATTAGGACAATTGCCTTATATTCAATCACTTGATGTATCTTGTAACAAATTTACTGGAACAATACCTGAGTCCCTTCAGTTATGTTCCTATCTCAAAacactcaacttctctttcaacaaTTTCTCAGGAAATGTTTCAAACAAAGGAGCATTTTCATCTTTAACCAAAGATTCTTTTCTAGGAAACAATGATCTATGTGGTCCATTTAATGGCATGAAACAATGTCATGGGAAAAAAAgttatcatttggtgtttttgttAGTTCCTGTGTTACTATTTGGCACACCTATGATATGCATGTGTAGGAACTCCATGATAATCAAGTCAAAAATGAGAAAGAAACTGCGAGTCGTTACTGGATGTGACTCggaggatgaagaagaagatgaaaccaAAGAGCTGAAGTATCCAAGAATTTCATATAGACAACTTAGAGAAGCCACTGGAGAGTTCAGTGCTTCAAGTCTCATTGGTTCAGGTCGGTTCGGTCGGGTTTACAAAGGTGTACTCTTAGATAATACAAGAGTAGCTGTGAAGGTATTGGATACAAGAACAGATGGTGAAATATCATGGAGCTTTAGAAGGGAATGTCAAATTCTTAAAAAGATAAGGCATAGAAATTTAATAAGGATCATCACAATTTGCAATAAACCAGAATTTAAGGCTCTTGTTCTTCCACTAATGCCAAATGGTAGTCTTGAAAAGCACCTATATGATCCAAACCATGAGTTAAGCCAGAGATTGGATGTGATTCAACTAGTGAGGATTTGTAGTGATGTAGCTGAGGGAATGTGTTATCTGCACCATTACTCTCCTGTGAAAGTAGTGCATTGTGATCTTAAGCCAAGTAACATACTACTTGATGATGACTTTACAGCTTTGATTACTGATTTTGGAATTTCAAGGCTTGCAAAAGGTGATGACAATACTTCCACATGTAATAATTCAACATCTTTCAGTTCAACACATGGCTTGTTATTTGGCTCAGTTGGTTATATAGCTCCTGAATATGGAATGGGAAAACATGCTTCAAATGAGGGTGATGTTTACAGTTTTGGAGTAATTCTGTTAGAAATAGTGACAAGTAGACGCCCTACTGATGTCCTAATCCATGAAGGCTTTAGCTTGCATGATTGGGTTAAGAGACAATACACACAGCCAGACAAGCTTAAAACCATTGTTGAAGAAGCACTTAAAAGGCACTGTCTTTCTTGTGTGCCAAGTAATGATACCAAAGTTTTGGAAGATGTTATGTTGGAACTCATTGAGCTAGGGATACTCTGCACACAACAGAACCCTTCAACAAGACCAACCATGATAGATGTAGCACAAGAGATGGGGAGGTTGAAGGATTATCTCATTAATGCTTTTAGAAGAGAAgataatttaattgaaattgaaaattaa 2967 0.3505 MMCFFKQLTMFLFYFLIFAHSRVLEKEHVGFMNDKASLVSFMSCIISDPENALESWKSNVVHVCDWSGVKCNNASHNKRIIELDLSGKSLGGTISPSLANLSLLQILDLSGNLLVGHIPRELGSLVHLEQLSLSWNFLQGNIPLEFGSLHNLYYLDLGSNQLEGEIPPSLLCNGTSLLSYLDLSNNSLVGKIPLNTNRCILKDLKFLLLWSNKLVGQVPLALSNSTKLKWLDLESNMLSGELPSKIICNFPQLQFLYLSYNNFVSHDSNTNLEPFFASLMNSSNFQELELAGNSLGGKLPHIIGNLPTSMQHIHLEENLIHGFIPPHISNLVNLTFLKLSSNRINGTIPHSLCKIVRLERIYLSDNYLSGEIPSTLGDIKHLGLLDLSRNKLFGSIPDSFANLPQLRRLLLYDNNLSGIIPPSLGKCVNLEILDLSHNKITGMIPSEVAALTSLKLYLNLSNNELQGPLPLELSKMDMVLAIDISMNNLSGRVPPQLENCIALEYLNLSGNSLEGPLPNSLGQLPYIQSLDVSCNKFTGTIPESLQLCSYLKTLNFSFNNFSGNVSNKGAFSSLTKDSFLGNNDLCGPFNGMKQCHGKKSYHLVFLLVPVLLFGTPMICMCRNSMIIKSKMRKKLRVVTGCDSEDEEEDETKELKYPRISYRQLREATGEFSASSLIGSGRFGRVYKGVLLDNTRVAVKVLDTRTDGEISWSFRRECQILKKIRHRNLIRIITICNKPEFKALVLPLMPNGSLEKHLYDPNHELSQRLDVIQLVRICSDVAEGMCYLHHYSPVKVVHCDLKPSNILLDDDFTALITDFGISRLAKGDDNTSTCNNSTSFSSTHGLLFGSVGYIAPEYGMGKHASNEGDVYSFGVILLEIVTSRRPTDVLIHEGFSLHDWVKRQYTQPDKLKTIVEEALKRHCLSCVPSNDTKVLEDVMLELIELGILCTQQNPSTRPTMIDVAQEMGRLKDYLINAFRREDNLIEIEN 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04708 988 SMART LRR_typ_2 428 451 IPR003591 -
Tsu04g04708 988 SMART LRR_typ_2 149 173 IPR003591 -
Tsu04g04708 988 SMART LRR_typ_2 379 402 IPR003591 -
Tsu04g04708 988 SMART LRR_typ_2 250 273 IPR003591 -
Tsu04g04708 988 SMART LRR_typ_2 403 427 IPR003591 -
Tsu04g04708 988 SMART LRR_typ_2 331 355 IPR003591 -
Tsu04g04708 988 SMART LRR_typ_2 101 125 IPR003591 -
Tsu04g04708 988 Pfam Leucine Rich Repeat 503 523 IPR001611 GO:0005515
Tsu04g04708 988 SUPERFAMILY RNI-like 80 369 - -
Tsu04g04708 988 ProSitePatterns Protein kinases ATP-binding region signature. 677 699 IPR017441 GO:0005524
Tsu04g04708 988 Gene3D Ribonuclease Inhibitor 201 597 IPR032675 -
Tsu04g04708 988 Gene3D Transferase(Phosphotransferase) domain 1 748 982 - -
Tsu04g04708 988 CDD STKc_IRAK 677 969 - -
Tsu04g04708 988 SUPERFAMILY L domain-like 339 587 - -
Tsu04g04708 988 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Tsu04g04708 988 PANTHER LEUCINE-RICH RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN 25 970 - -
Tsu04g04708 988 Gene3D Ribonuclease Inhibitor 31 200 IPR032675 -
Tsu04g04708 988 SMART serkin_6 671 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04708 988 SMART LRR_sd22_2 282 308 - -
Tsu04g04708 988 SMART LRR_sd22_2 427 448 - -
Tsu04g04708 988 SMART LRR_sd22_2 149 183 - -
Tsu04g04708 988 SMART LRR_sd22_2 125 146 - -
Tsu04g04708 988 SMART LRR_sd22_2 331 346 - -
Tsu04g04708 988 SMART LRR_sd22_2 225 252 - -
Tsu04g04708 988 Gene3D Phosphorylase Kinase; domain 1 641 746 - -
Tsu04g04708 988 ProSitePatterns Serine/Threonine protein kinases active-site signature. 795 807 IPR008271 GO:0004672|GO:0006468
Tsu04g04708 988 Pfam Protein kinase domain 673 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04708 988 Pfam Leucine rich repeat 357 416 IPR001611 GO:0005515
Tsu04g04708 988 PANTHER OS04G0122200 PROTEIN 25 970 - -
Tsu04g04708 988 SUPERFAMILY Protein kinase-like (PK-like) 652 964 IPR011009 -
Tsu04g04708 988 ProSiteProfiles Leucine-rich repeat profile. 429 450 IPR001611 GO:0005515
Tsu04g04708 988 ProSiteProfiles Protein kinase domain profile. 671 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04708 Tsu-Chr4 54513759 54517630 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04708 27 978 Receptor kinase-like Gene Family AT3G47570 34.928 4.06e-159 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tsu04g04708 Pkinase 6.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04708 - - lang:109346572 1397.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04708 04 54513759 54517630 Tsu04g04708 04 54513759 54517630 ECH