Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04701 ATGGCGAAAAAATCGCAGAAGCAAATCGAGAAAGACAATGCAAGcaatgataacaataatcttAATGCTAGTAACACGGTTACTACTAAGGCGAAACGGACCAGGAAAAGTGTTCCTAGAACTAGTCCTCCTCAGCGTAGCTCAATATACCGAGGAGTCACTAGGCACCGGTGGACAGGTCGATATGAAGCTCATTTGTGGGATAAGAATTGTTGGAATGAGTCTCAGAACAAGAAAGGAAGACAAGTTTACCTTGGTGCTTATGATAATGAAGAGACTGCAGCACATGCTTATGATCTAGCAGCATTGAAATATTGGGGTCAAGATACCATTATTAATTTTCCGTTATCAAACTATCAGAAAGAACTTATTGAAATGGATAGTCAATCAAGGGAGGAATATATTGGATCTTTAAGAAGAAAAAGCAGTGGTTTTTCTAGGGGAGTTTCTAAATATAGAGGTGTTGCAAGACATCATCATAATGGAAGGTGGGAGGCTAGGATTGGCAAAGTTTTTGGCAATAAGTATCTTTATCTTGGAACCTATGCTACCCAAGAGGAAGCAGCTACAGCTTATGACATGGCAGCTATTGAATACCGTGGACTTAATGCTGTTACTAATTTTGATCTAAGCCGTTATATTAAGTGGCTTAagcccaacaacaacaacaatgataATAACAAGTCCAATATTAATCTTAGTGACATTAACTCTAACTATAGTACCAACGACCAAAACTCTAATGAAGAATTGGAATTTAGTCTACTAGACAATGAGACATTATCACTCAATAATTCTATTGATGAAGCCACATTGGTTCAACCTCGACCAGCTAGTGCCACATCAGCCCTAGAGCTTTTGCTTCAATCATCTAAGTTTAAGGAAATGGTTGAAATGGCATCTATGACAACTAATGTGTCAACAACATTGGAGTCTGATCAATTGTCACAATGTGCATTTCCTGATGACATTCAAACTTACTTTGCATATGAAGATTTTAATGATGGTACTATGTTGGATGATCTCAACTCCATTGTGCCTATGTTCCACTTTGAGGGTGCTGAGATTTTATAA 1074 0.3659 MAKKSQKQIEKDNASNDNNNLNASNTVTTKAKRTRKSVPRTSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDNEETAAHAYDLAALKYWGQDTIINFPLSNYQKELIEMDSQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGKVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNNNNNDNNKSNINLSDINSNYSTNDQNSNEELEFSLLDNETLSLNNSIDEATLVQPRPASATSALELLLQSSKFKEMVEMASMTTNVSTTLESDQLSQCAFPDDIQTYFAYEDFNDGTMLDDLNSIVPMFHFEGAEIL 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04701 357 SMART rav1_2 49 121 IPR001471 GO:0003700|GO:0006355
Tsu04g04701 357 SMART rav1_2 151 215 IPR001471 GO:0003700|GO:0006355
Tsu04g04701 357 ProSiteProfiles AP2/ERF domain profile. 151 209 IPR001471 GO:0003700|GO:0006355
Tsu04g04701 357 ProSiteProfiles AP2/ERF domain profile. 49 115 IPR001471 GO:0003700|GO:0006355
Tsu04g04701 357 MobiDBLite consensus disorder prediction 1 52 - -
Tsu04g04701 357 CDD AP2 48 117 IPR001471 GO:0003700|GO:0006355
Tsu04g04701 357 CDD AP2 150 211 IPR001471 GO:0003700|GO:0006355
Tsu04g04701 357 Pfam AP2 domain 150 201 IPR001471 GO:0003700|GO:0006355
Tsu04g04701 357 Pfam AP2 domain 49 107 IPR001471 GO:0003700|GO:0006355
Tsu04g04701 357 Coils Coil 4 24 - -
Tsu04g04701 357 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 335 - -
Tsu04g04701 357 SUPERFAMILY DNA-binding domain 150 211 IPR016177 GO:0003677
Tsu04g04701 357 SUPERFAMILY DNA-binding domain 48 117 IPR016177 GO:0003677
Tsu04g04701 357 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Tsu04g04701 357 PRINTS Ethylene responsive element binding protein signature 191 211 IPR001471 GO:0003700|GO:0006355
Tsu04g04701 357 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1 335 - -
Tsu04g04701 357 MobiDBLite consensus disorder prediction 12 32 - -
Tsu04g04701 357 Gene3D AP2/ERF domain 150 211 IPR036955 GO:0003700|GO:0006355
Tsu04g04701 357 Gene3D AP2/ERF domain 49 117 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04701 Tsu-Chr4 54469548 54472540 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04701 45 213 AP2-EREBP Transcription Factor Family AT5G57390 73.373 1.21e-91 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Tsu04g04701 AP2 4.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04701 K09285 - gmx:100793339 510.76