Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04681 ATGAACATTAAGCTCATGAAACCACTTCTCATTAGTAGTTTTACTACTATTGATGGTCGCGGAGTTAATGTGCATATTGCGGAGAATGCATGCTTAATGATATTTAAGgcCACCAATATAATTATTCATAGCTTTCGAATTCATCACTGTAAATCTCAAGCTCCAGGGATGGTGATGGAGCCTAAtggaaaattaattaatttgggTCAAGTAGATGGAGATGCAATTAGATTGGTCACCGCTTCAAATATTTGGATTGATCATAATACACTTTATAAGTGTGAAGATGGTCTTCTTGATGTCACAGGAGGTTCTACTATAATGTGA 327 0.3364 MNIKLMKPLLISSFTTIDGRGVNVHIAENACLMIFKATNIIIHSFRIHHCKSQAPGMVMEPNGKLINLGQVDGDAIRLVTASNIWIDHNTLYKCEDGLLDVTGGSTIM 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04681 108 Pfam Pectate lyase 11 92 IPR002022 -
Tsu04g04681 108 PRINTS Pollen allergen Amb family signature 72 93 IPR018082 -
Tsu04g04681 108 PRINTS Pollen allergen Amb family signature 8 24 IPR018082 -
Tsu04g04681 108 PANTHER PECTATE LYASE 1 106 - -
Tsu04g04681 108 PANTHER PECTATE LYASE 18-RELATED 1 106 IPR045032 GO:0030570
Tsu04g04681 108 SUPERFAMILY Pectin lyase-like 1 106 IPR011050 -
Tsu04g04681 108 Gene3D - 1 108 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04681 Tsu-Chr4 54292674 54293215 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04681 1 106 Polysaccharide Lyase AT5G09280 66.038 1.59e-48 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04681 K01728 - gmx:100811216 186.037