Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04680 ATGCTTCTTGGGCATGATGATGGGTATATAAGGGACATAAACATGAAGGTTACTGTTGTGTACAATCATTTTGGACCTAATTGCAACCAACGAATGCCAAGAATTCGTCACGGATATGCACATGTAGCTAACAATCTTTACTTAGGGTGGGTGCAATATGCCATCGGAGGAAACATGGGTCCTAGCCTTAAAAGTGAATCTAACCTTTTCATAGCACCAAAAATTGGGAGTAAAGAGGTAACATGGAGAAAAATTGGTAATACAAATGGAGACAAATGGGAATTTTATTCGATTAGGGATGCATTTGAAAATGGAGCCTCTTTTGTGGTAACAAAAGGAGGACGTGTGTTAAAGCCGAATTATAGCAAAGAATAA 375 0.384 MLLGHDDGYIRDINMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYLGWVQYAIGGNMGPSLKSESNLFIAPKIGSKEVTWRKIGNTNGDKWEFYSIRDAFENGASFVVTKGGRVLKPNYSKE 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04680 124 PANTHER PECTATE LYASE 1 124 - -
Tsu04g04680 124 PRINTS Pollen allergen Amb family signature 31 50 IPR018082 -
Tsu04g04680 124 PRINTS Pollen allergen Amb family signature 93 117 IPR018082 -
Tsu04g04680 124 PRINTS Pollen allergen Amb family signature 53 72 IPR018082 -
Tsu04g04680 124 PANTHER PECTATE LYASE 18-RELATED 1 124 IPR045032 GO:0030570
Tsu04g04680 124 Gene3D - 1 124 IPR012334 -
Tsu04g04680 124 SUPERFAMILY Pectin lyase-like 2 109 IPR011050 -
Tsu04g04680 124 Pfam Pectate lyase 2 70 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04680 Tsu-Chr4 54291958 54292635 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04680 1 80 Polysaccharide Lyase AT5G09280 78.750 1.15e-44 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04680 K01728 - gmx:100780437 236.498