Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04674 ATGGGAAGAACAAGTTTTGTTCCATTTCAAGGTAACACCTTTATGCCACCATTAGCACAACCACcaaattcttttcattttcattccaAACCAATTTCACCATTTTCATCTATCATTGTTTCTAGTCTTCGATCTAATGATTTTGGTTTTAACAATAGTAGTAGTGCCTTAAAGGTTAGTCCAAGTATTCTtataattattatcattttagctattgtttttttcatttctgGTTTGCTTCATCTCTTAGTTAGATTTCTATATAGACCTGAGAGTAGAGACCCTGATGAATTGAGTGATGTTACTGTTCTTCAAGGTCAATTGCAACAGCTTTTTCATCTTCATGATTCTGGTGTTGACCAATCTTTCATTGATACACTTCCTGTGTTTCTTTATAAGACTATTATTGGTTTGAAAGTGAACCCTTTTGATTGTGCTGTTTGTTTATGTGAATTTGAACTTGAAGATAAGCTTAGATTGTTGCCAAAATGTAGTCATGCTTTTCATATGGAGTGTATTGATACATGGCTTTTGTCCCACTCTACTTGTCCTATTTGTAGAGCTAATTTGCTTCATGATTTCAACACAAGTAGTAATTGTTCACCTTTAGTTCTTGTTCTTGAATCTGGTAGTGATACTTCAAGAGAAATTGATCAAGAAAGAGAGGCTGAAATTGCTACTGCTAGTGTTGTTGGTAGGACTGGTTCTGTTATGTCAACAAATTCTTATCTTGGTTGTCGCGGAGACGGTGAATTCGGAGATGATTCGGCTTCGGTTGAAAATATTCCTGATTCAAATGTTGAAGTTGGTGATGGTGTGGAGAAAGTGGTTACTGTTAAGCTTGGAAAGTATAGGAATGTTGATGGTGGAGGAGAAGGAAGTAGCAGCAACAATGTGGATGATAGAAGGTGTTTTTCAATGGGATCATTTGCTTATGTTATGGATGAAACTTCATCATTGCAGGTACCAATTAGAATTCCAATGAAACAACAATTgaataagaagaagaatgtttTGCCTTTGATTCCAGGACATAGACAAGCAATGTCAGAATGTGACTGTCAATCTAGAAGAGATTTCAAATTTGCAAGCTTTGATTCAGTTAGAACTGAAGATACTGTTGTTAAAGGTAGTACTAGTGAGCCTGCTGCTATTGATAGAAGTAGTAAAGAGAGTTTCTCTATATCAAAGATTTGGCTTAGAGGGAAAAAAGATAAGAGAAATGGTGATGTAGCTGATTCATCTAGAAGGGCTTTTTCATTTAGGTTTCCATTACAAAGTAATGTTGGTGAAGATTTGAAGGGTAAGAATGGTAGATTTCATACTAGGAGTACTGTTTCTGAGATGGATTTTGGAAAATGGGAAAATGGAGTAGCAAGTGAATTTAGTGGTTATGATGAAGAAAGTCAAAGCTGTTATAGTATGGATTCTTCTCAACCAAGAGCACCTTCTTTTGCTAGAAGAACTTTGCTTTGGCTCACTGGAAGACAGAATAAGGTTGTTCATTCATCATCTGCTTCTACAATCCTttag 1533 0.3425 MGRTSFVPFQGNTFMPPLAQPPNSFHFHSKPISPFSSIIVSSLRSNDFGFNNSSSALKVSPSILIIIIILAIVFFISGLLHLLVRFLYRPESRDPDELSDVTVLQGQLQQLFHLHDSGVDQSFIDTLPVFLYKTIIGLKVNPFDCAVCLCEFELEDKLRLLPKCSHAFHMECIDTWLLSHSTCPICRANLLHDFNTSSNCSPLVLVLESGSDTSREIDQEREAEIATASVVGRTGSVMSTNSYLGCRGDGEFGDDSASVENIPDSNVEVGDGVEKVVTVKLGKYRNVDGGGEGSSSNNVDDRRCFSMGSFAYVMDETSSLQVPIRIPMKQQLNKKKNVLPLIPGHRQAMSECDCQSRRDFKFASFDSVRTEDTVVKGSTSEPAAIDRSSKESFSISKIWLRGKKDKRNGDVADSSRRAFSFRFPLQSNVGEDLKGKNGRFHTRSTVSEMDFGKWENGVASEFSGYDEESQSCYSMDSSQPRAPSFARRTLLWLTGRQNKVVHSSSASTIL 510
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04674 510 CDD RING-H2_PA-TM-RING 144 187 - -
Tsu04g04674 510 SMART ring_2 145 186 IPR001841 -
Tsu04g04674 510 ProSiteProfiles Zinc finger RING-type profile. 145 187 IPR001841 -
Tsu04g04674 510 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 192 IPR013083 -
Tsu04g04674 510 SUPERFAMILY RING/U-box 139 198 - -
Tsu04g04674 510 Pfam Ring finger domain 144 187 IPR001841 -
Tsu04g04674 510 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 57 440 - -
Tsu04g04674 510 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 57 440 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tsu04g04674 Tsu-Chr4 54221438 54223523 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04674 58 507 C3H Transcription Factor Family AT2G18650 44.937 8.12e-100 305
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04674 - - gmx:100797283 628.632
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04674 04 54221438 54223523 Tsu04g04674 04 54221438 54223523 ECH