Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04673 ATGCCTCATCCTCTTCATCACCATGCCGATCCTGAACCCAAACCAAACCCTAATCTCCTCTCCCTCTTCCTCAAACCAATCATCATGCTCATTCTCACCTCCCTCTTCTTCCTTTTCCTCGGTTTCGCCGCTTTTCTTCTCCTCAATCTCTTCCTCCTCGCCGGCGCACTCCACCGTCTCCGTTTCCGTCCTACTCCAACCCGTCGTCTTCAATCTCCTTCCGACGCTTTCCTCCCTCACGAAATCAACAACCTTCCTAATTTCCGTGTCAAAGGATCCGTACCCGGACCCGGACCCGATTCACGATGTGCGGTTTGTTTGGACGGTTTTCGTAATGGTCAATGGTGTCGAAATCTCGCTGCGTGTGGTCATGTTTTTCATCGTAGATGTATTGACACGTGGCTTCTTAAAGTTGCCACGTGTCCTACTTGTCGTACACCGGTTCGATCCAAACCCGAACCACCGCCTCAATGTTCGGTTTTAGAAGATCAAGGTTCTTCGCAAATTTGGAATTGCTCAAATAATAATTCCAATGGTTTCACCGTTTTATAG 552 0.4873 MPHPLHHHADPEPKPNPNLLSLFLKPIIMLILTSLFFLFLGFAAFLLLNLFLLAGALHRLRFRPTPTRRLQSPSDAFLPHEINNLPNFRVKGSVPGPGPDSRCAVCLDGFRNGQWCRNLAACGHVFHRRCIDTWLLKVATCPTCRTPVRSKPEPPPQCSVLEDQGSSQIWNCSNNNSNGFTVL 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04673 183 PANTHER RING-H2 FINGER PROTEIN ATL56 3 173 - -
Tsu04g04673 183 SUPERFAMILY RING/U-box 99 156 - -
Tsu04g04673 183 Pfam Ring finger domain 102 145 IPR001841 -
Tsu04g04673 183 SMART ring_2 103 144 IPR001841 -
Tsu04g04673 183 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 3 173 - -
Tsu04g04673 183 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Tsu04g04673 183 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 150 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04673 14 172 C3H Transcription Factor Family AT2G18670 40.252 9.79e-33 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04673 - - gmx:102664895 163.31