LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu04g04670	atgctTTCTAGATCTTGTTTAGGTTTACTAAATCATCAACTGTCACTAAACAACGATTACGAAAACATAAACACCGTTCAACAAGAACTCATGACAACGTTAATCGAACAACAACCCAATTTTCAACATTCAAATAACGTTGTTTCACTTCCTTCATCACcgatttctcgtaaacaaagaATGATTATAGTATCAAACCAGTTACCAATACGCATCGTTTCATCTTCTTGCGACGAAAGCTTCAAATTTGAATGGGATGTTGATAGCATAACGTTTCAGCTCAAAGAAGGTTTATCTTCTGATTCTGAAGTTTTTTACGTTGGTTCATTGAAAACACCGATCGAAATTGAACCGTCACAACAAGAAGAAATTGCGAAAACCTTGTTGCAACAGTTTCGTTGTGTTCCAACTTTTTTACCTTCAGAGATTCATAGTGGATTCTACCATGGTTTCTGTAAGCATTATCTTTGGCCTCTGTTTCACTATATGGTTCCTGTAACAAAGAGTCAAGGTGCACGTTTTGATGATTCTCAGTGGCGTGCTTATGTTACTGCGAATAGAATCTTTGCCGACAAGGTACGAGAAGTTATTAACGCTGATGAGGATTATGTTTGGGTTCATGATTATCATCTTATGATTTTGCCAACTTATTTGAGGAAACGTTTTCCTAAAGTCAAATTGGGTTTTTTCCTTCATAATACTTTTCCTACTTCTGAAATTTATAGAACAATACCTGTTCGTGAGGATATTTTGAGGGGTTTGTTGAATTGTGATTTAATTGGGTTTCATACTTTTGATTATGCAAGACATTTTTTGTCTTGTTGTAGTAGAATGTTGGGTTTGGATTATGAGTCTAAAAGAGGTTACATTGGACTTGATTACTTTGGTAGAAATGTTACAATCAAGATTCTTCCTGTGGGGATTCACATGGGTCTTCTCGAATCGGTTTTGTCGTTGTCTGATACAGCTAAGAGGGTGAAGGAGTTGAAGGAAGAGTATGAAGGGAAAGATGTGATTTTGGGGGTTGATGATATGGATTTGTTTAAAGGTATTGGGTTGAAGTTTTTGGCATTGGGAAAGCTTTTGGAGGATAATGAAAAATTAAGGGGTCAAGTTGTGTTGGTTCAGATTCTGAATCAAGCGAGGAGTAGCGGAAAAGATATTCAGGATTTGAAGTTTGAGATTGAAGCAATTGCTAAAGAGGTTAATGATGAATATGGTGATGAACAATCTGGGTATAGGCCAATTGTTTGTGTAAATGGTCCGGTTTCGACTCAGGAGAAGGTTGCATACTATGCTATATCGGAATGTTGTATTGTGAATGCTGTGAGAGATGGGATGAATTTGATGCCTTATGAGTATACTGTTTGCAGACAAGGAAGTGCTAAATTGGACAAAGCACTTGAGGTGGAAAATGATGAGGCTAAAAAGAGTGTCATTATTGTTTCTGAGTTCATTGGTTGTTCACCTTCGCTTAGTGGCGCAATTCGGGTGAATCCATGGAACATTGAAGATGTTTCTGACAAGATTAACTCAGCACTCAAAATGACGGATGCCGAAAAGCAATTGCGGCACAAGAAGAATTATAAATACATAAGCTCTCATGATGTAGCGTATTGGGCTAAGAGTTTTGATCAGGATTTAGAGAGAGCTTGTAGGGAGCATTATCTCAAAGTATATGTTGGATTAGGACTTGATCATTTTAGAATCATTGCTTTGGATCCTAGTTTTAAGAAGCTTTGTCTTGATGACATTGTCCCTGCTTATAGAGATACAAAGAGTAGGTTGATCCTTTTGGATTATGATGGCACCATGATGCCTCAGGGATCAACAAACAAAGCTCCAAGTTCTGTTGTTATCAATCTCTTGAATTCCTTATGCAGTGATCCCAAAAATAAAGTGTTCATTGTTAGTGGCAGGGGTAGAGTTTGCCTTAGCGACTGGTTTTCTCCATGTGACAAATTGGGTCTCTCTGCAGAACACGGTTACTTCACTAGGTGGAGTAAGGATTCTCTTTGGACGACTTGCGGATTGGCATCAGATTTTGATTGGAAAATTAATGTAGAAAAGGTGATGTCGCTTTATACAGAAGCAACTGATGGTTCCTTCATTGAAGAAAAGGAAAGTGCAATGGTTTGGCAACATCAAGAAGCAGATCCTGATTTTGGACTGTGGCAAGCTAAAGAGCTTCTTGTTCACCTTGAGAGTATGCTGGCCAATGATCCTGTAGTAGTTAAAAGAGGACAGCATATTGTTGAAGTAAAGCCTCAGAGTGTGAGCAAAGGTAAAGTAGTGGAAGAGCTTATATCAACCATGAGGAATGAAGGGAAGTCACCAGATTTTCTGCTATGCATAGGAGATGATAGAtcagatgaagatatgtttGAAAGCATTGCTAATTTAGCTTTATCAACCATATCACAAGTTTTTGCATGCACCATTGGTTTTAAACCAAGTAGGGCTAAATACTATTTGGATGATACTGGTTATGTTATCAATCTACTCGAAGGACTCGCCGCTACATCAGCAGCAGATTTAAGCGCATTGTAG	2550	0.3753	MLSRSCLGLLNHQLSLNNDYENINTVQQELMTTLIEQQPNFQHSNNVVSLPSSPISRKQRMIIVSNQLPIRIVSSSCDESFKFEWDVDSITFQLKEGLSSDSEVFYVGSLKTPIEIEPSQQEEIAKTLLQQFRCVPTFLPSEIHSGFYHGFCKHYLWPLFHYMVPVTKSQGARFDDSQWRAYVTANRIFADKVREVINADEDYVWVHDYHLMILPTYLRKRFPKVKLGFFLHNTFPTSEIYRTIPVREDILRGLLNCDLIGFHTFDYARHFLSCCSRMLGLDYESKRGYIGLDYFGRNVTIKILPVGIHMGLLESVLSLSDTAKRVKELKEEYEGKDVILGVDDMDLFKGIGLKFLALGKLLEDNEKLRGQVVLVQILNQARSSGKDIQDLKFEIEAIAKEVNDEYGDEQSGYRPIVCVNGPVSTQEKVAYYAISECCIVNAVRDGMNLMPYEYTVCRQGSAKLDKALEVENDEAKKSVIIVSEFIGCSPSLSGAIRVNPWNIEDVSDKINSALKMTDAEKQLRHKKNYKYISSHDVAYWAKSFDQDLERACREHYLKVYVGLGLDHFRIIALDPSFKKLCLDDIVPAYRDTKSRLILLDYDGTMMPQGSTNKAPSSVVINLLNSLCSDPKNKVFIVSGRGRVCLSDWFSPCDKLGLSAEHGYFTRWSKDSLWTTCGLASDFDWKINVEKVMSLYTEATDGSFIEEKESAMVWQHQEADPDFGLWQAKELLVHLESMLANDPVVVKRGQHIVEVKPQSVSKGKVVEELISTMRNEGKSPDFLLCIGDDRSDEDMFESIANLALSTISQVFACTIGFKPSRAKYYLDDTGYVINLLEGLAATSAADLSAL	849

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu04g04670	849	SUPERFAMILY	HAD-like	595	839	IPR036412	-
	Tsu04g04670	849	CDD	HAD_TPP	596	828	-	-
	Tsu04g04670	849	Gene3D	Glycogen Phosphorylase B;	50	321	-	-
	Tsu04g04670	849	TIGRFAM	HAD-SF-IIB: HAD hydrolase, family IIB	596	797	IPR006379	-
	Tsu04g04670	849	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	1	843	IPR001830	GO:0003824\|GO:0005992
	Tsu04g04670	849	Pfam	Glycosyltransferase family 20	60	549	IPR001830	GO:0003824\|GO:0005992
	Tsu04g04670	849	CDD	GT20_TPS	60	549	IPR001830	GO:0003824\|GO:0005992
	Tsu04g04670	849	Gene3D	Glycogen Phosphorylase B;	322	534	-	-
	Tsu04g04670	849	SUPERFAMILY	UDP-Glycosyltransferase/glycogen phosphorylase	59	553	-	-
	Tsu04g04670	849	TIGRFAM	T6PP: trehalose-phosphatase	593	838	IPR003337	GO:0003824\|GO:0005992
	Tsu04g04670	849	Gene3D	-	725	847	IPR023214	-
	Tsu04g04670	849	Gene3D	-	594	711	IPR023214	-
	Tsu04g04670	849	PANTHER	ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 11-RELATED	1	843	-	-
	Tsu04g04670	849	Pfam	Trehalose-phosphatase	598	827	IPR003337	GO:0003824\|GO:0005992

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu04g04670	Tsu-Chr4	54187404	54190718	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu04g04670	58	842	Trehalose Biosynthesis Gene Families	AT2G18700	65.316	0.0	1093

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu04g04670	K16055		-	gmx:100810498	1231.85