Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04660 ATGACCAAGTCCTTGTGTTTTTCATggtttgtgttattttttattttggtggtATATATGCAAACGGTGAGTACAAACGCAAAGGAGAGTGGAGTGATGAAATTGAGAGTCGGGGTCCCTAAGAAAGAAGGTTTCGCACAATTTGTGAATGTAGTTGGGGACTCTCATGAGAATAAATACAATGTTTCTGGATATTGCATGGATGTTTTCAATGCCGTTGTAAGCAACTTAACTTTCAAGGTTTCTCTACAAATTGAACCTTATTATGATGTTGTGGTGGGCGACATAACAATTACGGCGCATCGTGCACAATTTCTAGATTTTACACTGCCATATACAGAATTAGGAGTTAGAATGTTAGTTCCTGTTGTACATGGGAGGCACCAAACAATGTGGATTTTTGTGAAACCCTTTAGCTGGGATCTTTGGTTGAGCATACTCATAATCTCCATGCTCATAGGGTTTGTCATACTCATCATGGAAAGAAACGTACATATTGTTCCTCATCAGAACGAGACTTCTCCATATCGACGACAACTCAGTGCATTGACCATTTTATGGTTTCCGATATCACAAGCCATTCTTCCTGAAAGACATGTGGTTGCCAGAAAGTGCTCAAGATTTGTGTTGATGATTTGGTTACTATTAGCGTTTGTCCTAATGCAAAGTTACACAGCTAATTTGACGTCTATATTGACAGTAAATCAGATGCAACCCAGTTTTCTCAGCGTGAATGATCTAAGGAAATATGGATATCATGTTGGATATCAAACCGGTTCTTTGGTTTATGACGTCTTGGTACAACAATTGCAGTTTGATCCGACCAAGTTGAAGGGATATAACAACATTTATAGCTATCACGACGCTTTGAAGCGTGGAAGCCAAGGTGGGGGTGTCATAGCTATATTCGACGAAGTGCCCTACCTTAAAGCCTACCTTCAAACGTTTGGATCCGATTACATCATAGCTGGTCCTACCCTTCGAAGTGAAGGATTTGGTTTTgtaTTCCCTTACAACTCCAATCTTACTGCTCACTTTTCAAGAGCCATCTTAAATGTGACTGAAAATCACCATTTAATGAATAAGATTGAGGAAAAATATTTTGGGAGAAATGAAGAGCTACAAAAGCAGTCCGCGCAAGTGTCTTCAGCTTCACCAAGTCTTACCTTTCACAGCTTTGCAGGGTTGTTTTTGATCACTGGCATTTCTACCTTATTGGCATTATTTGTCTCTGAAATTCTTATTTGTCAAAAATCTATCTCGATGGTTAGACTTAGAGAATACACTCAGATATACTTGTTACGCTCTCTAGTTCCTACAGAAACACGTGTTCATCCAAATGATCTTCACTCAACACAGGGAACTATATTAGTAACTAGCTAG 1383 0.3839 MTKSLCFSWFVLFFILVVYMQTVSTNAKESGVMKLRVGVPKKEGFAQFVNVVGDSHENKYNVSGYCMDVFNAVVSNLTFKVSLQIEPYYDVVVGDITITAHRAQFLDFTLPYTELGVRMLVPVVHGRHQTMWIFVKPFSWDLWLSILIISMLIGFVILIMERNVHIVPHQNETSPYRRQLSALTILWFPISQAILPERHVVARKCSRFVLMIWLLLAFVLMQSYTANLTSILTVNQMQPSFLSVNDLRKYGYHVGYQTGSLVYDVLVQQLQFDPTKLKGYNNIYSYHDALKRGSQGGGVIAIFDEVPYLKAYLQTFGSDYIIAGPTLRSEGFGFVFPYNSNLTAHFSRAILNVTENHHLMNKIEEKYFGRNEELQKQSAQVSSASPSLTFHSFAGLFLITGISTLLALFVSEILICQKSISMVRLREYTQIYLLRSLVPTETRVHPNDLHSTQGTILVTS 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04660 460 Gene3D - 30 130 - -
Tsu04g04660 460 PRINTS NMDA receptor signature 208 235 IPR001508 GO:0005216|GO:0006811|GO:0016020|GO:0038023
Tsu04g04660 460 PRINTS NMDA receptor signature 393 417 IPR001508 GO:0005216|GO:0006811|GO:0016020|GO:0038023
Tsu04g04660 460 PRINTS NMDA receptor signature 142 167 IPR001508 GO:0005216|GO:0006811|GO:0016020|GO:0038023
Tsu04g04660 460 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 4 88 - -
Tsu04g04660 460 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 84 453 - -
Tsu04g04660 460 Pfam Bacterial extracellular solute-binding proteins, family 3 89 369 IPR001638 -
Tsu04g04660 460 SMART GluR_14 34 370 IPR001320 GO:0015276|GO:0016020
Tsu04g04660 460 Pfam Ligand-gated ion channel 370 402 IPR001320 GO:0015276|GO:0016020
Tsu04g04660 460 PANTHER RECEPTOR 3.3, PUTATIVE-RELATED 4 88 - -
Tsu04g04660 460 Gene3D - 131 275 - -
Tsu04g04660 460 PANTHER RECEPTOR 3.3, PUTATIVE-RELATED 84 453 - -
Tsu04g04660 460 SUPERFAMILY Periplasmic binding protein-like II 1 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04660 Tsu-Chr4 54092560 54095223 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04660 25 410 Ion Channels AT5G11210 36.077 1.94e-78 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04660 K05387 - gmx:100807817 545.043