Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04658 ATGGGGTCCTCTTTCAGTTGCTGTGGCTCAGAGAAGGTTGATGAAGTGCCATCATCATACGGTGCAGCTAACAATTCGTGGAGAATATTCACATACAAAGAGTTGCATACTGCTACAAATGGGTTTAGTGATGATTATAAGCTTGGTGAAGGTGGGTTTGGGAGTGTTTATTGGGGAAGAACCAGTGATGGTCTACAGATAGCAGTGAAGAAACTGAAAGCAATGAACTCAAAGGCAGAGATGGAATTTGCTGTAGAAGTTGAAGTACTTGGAAGGGTCAGGCACAACAATTTATTGGGTCTTAGGGGATATTGTGTTGGCGATGATCAACGTCTTATTGTCTACGATTACATGCCAAATCTCAGTCTACTTTCTCATCTCCATGGCCAATTTACTGGTGAAGTGCAACTCAACTGGCAAAGGAGAATGAGCATCGCAATTGGCTCCGCTGAAGGCATTTTgTACTTGCATCATCAGGTCACACCCCACATCATCCATAGGGACATAAAGGCAAGTAATGTTTTGCTTGATTCGGATTTTGTGCCTCTAGTTGCtgattttggatttgcaaaGCTAATCCCAGAAGGAGTAAGCCACATGACAACCCGTGTTAAGGGCACATTAGGATACTTGGCACCTGAGTATGCTATGTGGGGAAAAGTTTCTGAAAGTTGTGATGTCTATAGTTTTGGTATTCTTCTGCTAGAACTAGTAACCGGTAGAAAGCCGATAGAAAAGTTACCTGGCGGACTTAAGAGAACAATAACTGAATGGGCTGAGCCTTTGATAACCAAAGGAAGGTATAGGGATATGGTTGATCCAAAACTCCGAGGAAACTTCGATGAAAATCAAGTTAAACAAACAGTTAATGTGGCTGCTCTTTGTGTGCAAAGCGAACCTGAAAAACGACCAAACATGAAGCAAGTTGTTAATCTTCTGAAAGGACAAGAACCTGATCAAGGGAAAGTGACTAAGATGAGATTAGATAGTGTCAAATATAATGAGGAGTTGTTGGCACTTGATCAAccaagtgatgatgatgatgattttgatggaaATAGTAGCTATGGTGTTTTTAGTGCTATCGATGTTCAAAAGATGAATGATCCTTACAAGCGCGGTGATATAAAGAAAGTTGGCTAA 1143 0.3972 MGSSFSCCGSEKVDEVPSSYGAANNSWRIFTYKELHTATNGFSDDYKLGEGGFGSVYWGRTSDGLQIAVKKLKAMNSKAEMEFAVEVEVLGRVRHNNLLGLRGYCVGDDQRLIVYDYMPNLSLLSHLHGQFTGEVQLNWQRRMSIAIGSAEGILYLHHQVTPHIIHRDIKASNVLLDSDFVPLVADFGFAKLIPEGVSHMTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLELVTGRKPIEKLPGGLKRTITEWAEPLITKGRYRDMVDPKLRGNFDENQVKQTVNVAALCVQSEPEKRPNMKQVVNLLKGQEPDQGKVTKMRLDSVKYNEELLALDQPSDDDDDFDGNSSYGVFSAIDVQKMNDPYKRGDIKKVG 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04658 380 PANTHER OS01G0750732 PROTEIN 1 375 - -
Tsu04g04658 380 Pfam Protein tyrosine and serine/threonine kinase 47 313 IPR001245 GO:0004672|GO:0006468
Tsu04g04658 380 SUPERFAMILY Protein kinase-like (PK-like) 24 313 IPR011009 -
Tsu04g04658 380 Gene3D Transferase(Phosphotransferase) domain 1 118 330 - -
Tsu04g04658 380 SMART serkin_6 42 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04658 380 Gene3D Phosphorylase Kinase; domain 1 15 117 - -
Tsu04g04658 380 CDD STKc_IRAK 48 315 - -
Tsu04g04658 380 PANTHER PTI1-LIKE TYROSINE-PROTEIN KINASE 1 375 - -
Tsu04g04658 380 ProSitePatterns Protein kinases ATP-binding region signature. 48 71 IPR017441 GO:0005524
Tsu04g04658 380 ProSiteProfiles Protein kinase domain profile. 42 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04658 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04658 Tsu-Chr4 54045235 54046981 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04658 30 366 Trihelix Transcription Factor Family AT1G70460 44.699 7.18e-94 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Tsu04g04658 PK_Tyr_Ser-Thr 1.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04658 - - gmx:100783365 665.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04658 04 54045235 54046981 Tsu04g04658 04 54045235 54046981 ECH