Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04657 ATGCCCTTTAATTTTTATCTTTGTTATGTTCATAGAATTGGGACCTCTAAAGGAATTACCAAGTATTGCTTTGAGCATATAGATGAAGGTTGTACAATGATCTCAGTTGGTAGGTACACAAAGTCAGAACAGAATTATATCAATTCAAATTCCACACATTTTCAAGAAATGAATGCACAGAACAGTTCACCTAGAACAGTACTACTAGATGGACTAGAGGGACAATCCAACAGCACAGAAGATGATACATTTAGCACTAGAGCATCAAGCATGACATATACACCTTCATCTGATCCTAagattaaaagaaaatcaaagttAAGAAAATCACAATTCTCATTCAGGTTCATAATATCATTCCTTGGTTCACCATTCAGAATAAAAAGCTTCAACATGtccaaaattgaaaaacatcAACCCTTGTTGAAGTGCTTCAGCTATGAAAACATATCAAATGCTACTAATGACTTTCACCAAGATAATTTGGTTGGAAGAGGAGGGTACTCAGAAGTGTACAAAGGTGTTCTTGGTGATGGAGAAACAATTGCTGTGAAGAGATTAGCCAAAGACAACAATGATCCAAACAAGGAAAAAGAGTTCCTTATGGAGTTAGGTGTTATTGGACATGTGTGTCATCCTAATACTGCAACTTTGTTGGGCTATTGCATTGAAAATGGGCTTTATCTGATTTTCAATTACTCTCAAAATGGAAACTTGTCAACTGCATTGCATGGTTATGGTAAAGCAGGAAACTCACTTGACTGGCCAATAAGATACAAAATAGCTATTGGAGTTGCAAGGGGTCTCCATTATCTTCATGCATGTTGTAAACATCGAATAATTCACCGCGACATTAAAGCCTCCAATGTTCTTCTAGGTCCTGATTATGAACCACAGATAACTGATTTTGGACTTGCAAAGTGGCTTCCTAACAAGTGGACCCATCATGCTGTAATCCCAGTGGAGGGAACATTTGGATATCTAGCACCAGAAGTCTTTATGCATGGTATTGTCGATGAGAAAACTGATATCTATGCATTTGGTGTTCTTCTTCTCGAGATTGTAACCGGACGCAGACCTGTTGATTCATCAAAGCAAAACATTCTCCTATGGGTAAATACACCTTTCGTtaaataa 1137 0.3632 MPFNFYLCYVHRIGTSKGITKYCFEHIDEGCTMISVGRYTKSEQNYINSNSTHFQEMNAQNSSPRTVLLDGLEGQSNSTEDDTFSTRASSMTYTPSSDPKIKRKSKLRKSQFSFRFIISFLGSPFRIKSFNMSKIEKHQPLLKCFSYENISNATNDFHQDNLVGRGGYSEVYKGVLGDGETIAVKRLAKDNNDPNKEKEFLMELGVIGHVCHPNTATLLGYCIENGLYLIFNYSQNGNLSTALHGYGKAGNSLDWPIRYKIAIGVARGLHYLHACCKHRIIHRDIKASNVLLGPDYEPQITDFGLAKWLPNKWTHHAVIPVEGTFGYLAPEVFMHGIVDEKTDIYAFGVLLLEIVTGRRPVDSSKQNILLWVNTPFVK 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04657 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 280 292 IPR008271 GO:0004672|GO:0006468
Tsu04g04657 378 Gene3D Phosphorylase Kinase; domain 1 122 233 - -
Tsu04g04657 378 PANTHER OS08G0249100 PROTEIN 15 373 - -
Tsu04g04657 378 SMART serkin_6 157 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04657 378 SUPERFAMILY Protein kinase-like (PK-like) 131 366 IPR011009 -
Tsu04g04657 378 MobiDBLite consensus disorder prediction 71 98 - -
Tsu04g04657 378 PANTHER OS08G0249100 PROTEIN 15 373 - -
Tsu04g04657 378 ProSiteProfiles Protein kinase domain profile. 157 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04657 378 ProSitePatterns Protein kinases ATP-binding region signature. 163 185 IPR017441 GO:0005524
Tsu04g04657 378 Pfam Protein kinase domain 157 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04657 378 Gene3D Transferase(Phosphotransferase) domain 1 235 377 - -
Tsu04g04657 378 MobiDBLite consensus disorder prediction 71 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04657 Tsu-Chr4 54035405 54039613 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04657 94 372 Trihelix Transcription Factor Family AT1G26150 41.869 5.85e-60 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Tsu04g04657 Pkinase 2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04657 - - ccaj:109809416 610.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04657 04 54035405 54039613 Tsu04g04657 04 54035405 54039613 ECH