Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04656 ATGGGTATTGAAAGAGGTGGACTTAAGAGTTTTCGTACCAGCAACTGGAGTGTGCCACCTAAGCTATGCGATTCTTGCAAACTTACTTCCGCCGCGCTTTTTTGCCGTTCAGATTCCGCGTTTCTATGCATCAACTGTGATTCCAGAATTCATTCCGCTAACAAACTCTCTTCCCGCCACGAACGTGTCTGGATGTGTGAAGTGTGTGAACAAGCACCAGCTTCCGTCACGTGCAAAGCTGACGCTGCCGCACTTTGCGTCACGTGCGATTCTGATATCCACTCTGCAAATCCACTCGCTCGCCGTCACGAGCGTGTTCCCGTCGAACCTTTCTACGACTCCGCTGAATCTGTCGTGAAATCCTCCACCGCCGCTGCAGCTGCTGCCGCTTCCTTCAATTTCGTTGTTCCTACCGATGACGGTTACGGTCAAGACGATGTTGAAGCATCCGCGTGGCTAATTCCGAATCCTAATTTTGGATCTAAACTTGCTGAAACTCCAGATATCAAAACTAGAGAGATGTTCTTTTCCGATATGGATCCGTTTCTTGATTTCGATTACTCAAACAATTTCCAGAACAATAACTGTAGCAATGGTTTAAACGATAGCGTTGTTCCGGTTCAAACTAAACCTATTCCGGCGCCGATGATGAATCATAACTCAGAAGGTTGCTTCGACATCGATTTTTGCAGATCGAAGCTATCTTCCTTTAACTATCCATCACATTCTATTAGCCATAGCCAGGTTTCATCCTCTTCACTTGACGTTGGAGTGGTACCGGATGCAAACACCGTGTCGGAGTTATCATACACTTTCGGTGGTTCAGAATCAAGTGGAATGGTTTCCGGAGGTGTGAATAGTAACCAAGGGGTGCAAGGAGCAACTCAATTGTGTGGAATGGATCGTGAAGCGAGGGTTCTTAGGTacagagagaagagaaagaatcgTAAATTCGAGAAAACTATTCGTTACGCTTCACGAAAAGCTTATGCAGAAACCCGGCCCAGAATTAAAGGCCGGTTCGCTAAACGAACTGAAATTGACTCGGATGTAGACCGTTTCTATAACTCGGCCGATCCTCTTACAGTTCCTGGTTCACTTTTAATGGACTCTCAGTACGGCGTCGTTCCCACGTTTTAG 1140 0.457 MGIERGGLKSFRTSNWSVPPKLCDSCKLTSAALFCRSDSAFLCINCDSRIHSANKLSSRHERVWMCEVCEQAPASVTCKADAAALCVTCDSDIHSANPLARRHERVPVEPFYDSAESVVKSSTAAAAAAASFNFVVPTDDGYGQDDVEASAWLIPNPNFGSKLAETPDIKTREMFFSDMDPFLDFDYSNNFQNNNCSNGLNDSVVPVQTKPIPAPMMNHNSEGCFDIDFCRSKLSSFNYPSHSISHSQVSSSSLDVGVVPDANTVSELSYTFGGSESSGMVSGGVNSNQGVQGATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIDSDVDRFYNSADPLTVPGSLLMDSQYGVVPTF 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04656 379 CDD Bbox1_BBX-like 22 65 - -
Tsu04g04656 379 ProSiteProfiles Zinc finger B-box type profile. 61 108 IPR000315 GO:0008270
Tsu04g04656 379 ProSiteProfiles Zinc finger B-box type profile. 18 65 IPR000315 GO:0008270
Tsu04g04656 379 Pfam CCT motif 302 344 IPR010402 GO:0005515
Tsu04g04656 379 SMART bboxneu5 18 65 IPR000315 GO:0008270
Tsu04g04656 379 SMART bboxneu5 66 108 IPR000315 GO:0008270
Tsu04g04656 379 Pfam B-box zinc finger 63 108 IPR000315 GO:0008270
Tsu04g04656 379 Pfam B-box zinc finger 20 62 IPR000315 GO:0008270
Tsu04g04656 379 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 12 379 - -
Tsu04g04656 379 CDD Bbox1_BBX-like 66 108 - -
Tsu04g04656 379 ProSiteProfiles CCT domain profile. 302 344 IPR010402 GO:0005515
Tsu04g04656 379 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 12 379 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04656 Tsu-Chr4 54027336 54029481 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04656 1 379 C2C2-CO-like Transcription Factor Family AT5G57660 52.455 4.08e-117 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Tsu04g04656 zf-B_box 4.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04656 - - cam:101510742 594.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04656 04 54027336 54029481 Tsu04g04656 04 54027336 54029481 ECH