Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04647 ATGGGTAGAGCTCCATGTTGTGACAAAGCTAATGTGAAGAAAGGACCTTGGTCTCCTGAAGAAGATGCTACACTCAAATCATATATTGAAACAAATGGAACTGGTGGAAATTGGATTGCTCTTCCTCAAAAAATTGGGCTCAAGAGATGTGGAAAGAGTTGCAGACTTAGGTGGTTAAATTACTTGAGACCTAATATAAAACATGGTGGATTTACTGAAGAAGAAGACAACATCATTTGCAGCCTTTACATTAGCATTGGAAGCAGGTGGTCCATTATTGCTGCTCAGTTACCTGGAAGAACTGATAATGACATCAAAAACTATTGGAACAcaagattgaagaagaaattaCTCGGGAAGCGAAAACAATcgaataacaacaacaacaacaatagcTTGATGAATCAAAAGGATACAAATGGAATAGATGAGAATTCTTATTCAAATTCTTTGAGTAGTTCAGCTCTTGAAAGACTTCAACTTCATATGCAACTTCAAAACCTTCAAAACCCTTTCTCTTTTTACAATAATAACCCTGCTTCATTAGTTTGGCCAAAGTTGCATCCTTCTCAAGAAAAAATGATCCAAATTAGTCTTCAAAATTCTAATAATATTAACCCTATGATGCAAAATGTTTTCACTTCACCACAGGTTGATGTTTTGGAGAATATTAATATTCCTTTGgagaataataatattaacaattcAGTTACCTTCAATGCTTCTTCAAGTGTTGCACCAAGAGGAGAAGGTGTTGAGATCAAGAGTAGTACTAATGAAGGAATTCAACAACTGGAAAATGAACTTGATGAGATTCTCAACAACagaaatattaatattacaacAATGGAAGATGAATTTGATTGTTTCAgagatattaataataatgtttcaAAGGATGATCAAAGTATGATATGGTGGTCAAATGATTCAGGTGATACTACTAAATCTGGATCCTCAAACTCATGGGATTCATCAACTAATCTTATGCAAGATCAAGGAATGTTCCAAGATTATGAACTAGGTTACACTATGTAG 1038 0.317 MGRAPCCDKANVKKGPWSPEEDATLKSYIETNGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKRKQSNNNNNNNSLMNQKDTNGIDENSYSNSLSSSALERLQLHMQLQNLQNPFSFYNNNPASLVWPKLHPSQEKMIQISLQNSNNINPMMQNVFTSPQVDVLENINIPLENNNINNSVTFNASSSVAPRGEGVEIKSSTNEGIQQLENELDEILNNRNINITTMEDEFDCFRDINNNVSKDDQSMIWWSNDSGDTTKSGSSNSWDSSTNLMQDQGMFQDYELGYTM 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04647 345 MobiDBLite consensus disorder prediction 122 149 - -
Tsu04g04647 345 Gene3D - 7 68 - -
Tsu04g04647 345 Gene3D - 70 143 - -
Tsu04g04647 345 Coils Coil 255 275 - -
Tsu04g04647 345 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Tsu04g04647 345 CDD SANT 71 111 IPR001005 -
Tsu04g04647 345 CDD SANT 16 62 IPR001005 -
Tsu04g04647 345 PANTHER OS09G0431300 PROTEIN 1 300 - -
Tsu04g04647 345 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Tsu04g04647 345 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Tsu04g04647 345 MobiDBLite consensus disorder prediction 117 149 - -
Tsu04g04647 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Tsu04g04647 345 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Tsu04g04647 345 SMART sant 13 64 IPR001005 -
Tsu04g04647 345 SMART sant 67 115 IPR001005 -
Tsu04g04647 345 MobiDBLite consensus disorder prediction 309 328 - -
Tsu04g04647 345 PANTHER OS09G0431300 PROTEIN 1 300 - -
Tsu04g04647 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Tsu04g04647 345 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04647 Tsu-Chr4 53961208 53962698 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04647 1 189 MYB Transcription Factor Family AT5G57620 76.720 9.80e-101 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu04g04647 Myb_DNA-binding 2.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04647 K09422 - gmx:100783440 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04647 04 53961208 53962698 Tsu04g04647 04 53961208 53962698 ECH