Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu04g04646 | ATGTGTAATAAAGGGTTTCAATGCTTGAGCGAGTCTGAGACTATAATTGATCATAGACAGCATTTTATTATGATGGATAGCCCTACGGTTAGATCGCCGGTTACAGCCACCACAACCGGTTCAGGTTCCGGTTCAAATGATGATGGCCGGCGTGTTAAATTTTTGTGTAGTTTTCTAGGTAGTATAATGCCACGTCCACAAGATGGGAAGCTACGTTATGTTGGTGGAGAGACGAGAATTGTGAGTGTTTCGAGAGATATTAGTTTTGAGGAGTTGATGGGGAAGATGAGGGAGTTGTATGAAGGTGTTGCTGTGTTGAAGTATCAGCAACCTGATGAAGATCTTGATGCACTTGTATCTGTTGTTAACGATGATGATGTGGTTAACATGATGGAAGAGTATGATAAGTTAGGTTCGGGGGATGGGTTCACTAGGCTTAGGATTTTCTTGTTTTCGCAATCTGAGCAAGATGGTTCGGCAAACTTCATTGATGGGGATGATCCTGAGAGGAGGTATGTGGATGCATTGAATAGTTTAAATGATGCTTCTGAGTTACGGAGGTTGCAACAGATGGAGTTTCCTATGATTGGTACCGTCGAGGATATCTGTGTGGCTGATCAGTTCCTTAATCCTATTGCCATGGAAAATGGGATTCATAGCCAGAGAAATGGGGAACTAGCCATGTCACCGTATAGTTTGCATCCTATCCCTATCCAGCACCAGCAACCTATGGGTCAGAGGTATAATGAAATTGATGCTCAGTGGAATCCTGGTTATTACTCTCCTAGGCATCATGGTCAGTGTCACCATGACTCCAGATCATCATTGGTTGACTATCCATCTTCTCCGTCTGGCACAAGGTACCGTGTGCCATTTCCTGAGATGCCAGATAAGGGCATTGATAGAGTGCCAGACGAGTATGCTCGGCATCACGTAAATCATCATCCTTTATACGACAATCAACCACAGTATCCTGAAAACGTTGTGTGGCTGCCAACTGGAGCAGCACATGGTGATAAGTCCAGTTTTCCAGGCAACCTTCATCATGGTTCTCATGCTCTTGATGGGAATAATATACGCGAGCACTGTCGCACGAGTTTTCAGAGAGCTCAACCACATTTGGAGCATCCTAATATGCTTCCACCTGTTGCCATTCCTTGTCCAGAACGCCCCTCAAGCAGGGATGCTCTCACAGTGAATGCTGATGGCAAGTTACAGCCTACAATGTATCCCAATGATACTCAAAATCATGAGAGAGGATGTGGTTTGCAGCATCAGGGTTCTGGAAGAGTGAGTGATCATTATCTTGGCGATGTTCCTATTATTAATTTCCCTCCTGGACATGGTAGTATGATTGATGGACATGTTCTTCCTTCCAATCATGTTCATCAACAGGTTGGACCTGAATTGGGGGTTGAACTGTTCCCTGACCAAACTTTGGCTAATATGCCGCATCTAAAAATTCCTCCGTTGGAAGAACGCAGTGTGCAGTATGGAAAGACATCTTCTCCTTATGGAGTAGATAATAATTACGCTGTGCCTTGTGGACATGCACCTGGTTATACTCTTTGGAGAAACAGTCTGACTCCAGTTCATATTGGATCACCACACGAGGCAACTACTCCACATCAGCCAATTGATGGTGTGATAAATACTGGAATTTTCAGGAGAGAGGGCAGTCCAGGTTTTTTCGTTGGACCAGATAGCCAAAGTCTTTGGGTTGATTCGTCACAGAAATTTTCAGGTCATGATGGGTCAGCCATCCCCGAATACCCTTATGCAAATGCTTCGAAGTTGAATCCAATGACCACCTGTCAGGAAAATCATCACCCAATTATTTTAGATGCCATTCATCCTCCACATGACGTAAATGCTGGTACCTGCTTGGAACCTGTGCAGCTGCAAAAATCTTCTCTTAATATGGTTCACAATAATGaggttttaaaaattgatactCATTTGACCGAAGTGATCAGTTTGCAATCTATAAGTTTGCTTGGAGaaggaaaacaaacaaaaaataaggaaaatgttgCTTCTGTTGAGtgtaaaaattcattttcaaaaccCGCATCAGGGTGTGGACATGTCGAGAAACTGGATGATAAGGACTGTTCTGCTCATGAAGATTCTAAGCATTTAGCTGACCAATTCAATATCTTGCCCGAGTTAATTGCTTCTGTTAAAAAGGCTGCATTAGAATGTCACGATGAGGTGAAACCTACACGTGAAGAGCGTGTCAATTGTCAGATTGATAATTCAAATACCAAAGAAGAAACAGCAAATGAAGTTGAACCAGTGAATGCTCACGGTGATTTAGAATTGGACACTGAAAACGACCATGTTGATACTAATAAAATCGAGCCTACAAAGGCCGAGGCAGAAGCAATTGCTAGGGGATTACAGACAATTAGAAATGATGATTTGGAGGAGATCCGTGAGCTAGGTTCTGGAACTTATGGGGCTGTTTATCATGGGAAATGGAAAGGTTCCGATGTCGCCATTAAGAGAATAAAAGCCAGTTGTTTTTCTGGAAGACCATCAGAAAGAGCAAGATTGATTGCAGATTTCTGGAAGGAGGCATTAATGCTGAGTTCATTGCATCATCCGAATGTTGTCTCCTTCTATGGTATTGTTCGTGATGGCCCTGATGGGTCTTTAGCAACAGTGACAGAATTCATGGTTAATGGATCTTTGAAACAGTTCTTGCATAAGAAGGACAGAACGATAGATCGTCGGAAGAGGCTCATTATAGCCATGGATGCTGCATTTGGGATGGAGTATTTGCACGGAAAGAACATCGtgcattttgatttgaaatgtGAGAATCTATTGGTCAACATGAGAGATCCACAACGACCTGTCTGCAAGATTGGTGATTTGGGTCTATCAAAGGTTAAGCAGCACACACTAGTGTCCGGAGGGGTACGCGGCACTTTACCTTGGATGGCACCTGAACTTCTTAGCGGGAAAAGCCATATGGTGTCAGAGAAGATCGATGTTTACTCTTTCGGGATTGTCATGTGGGAATTACTCACAGGGGATGAACCTTATGCTGATATGCATTGTGCTTCAATAATAGGAGGAATTGTGAACAACACTTTACGTCCCCAAATCCCAACCTGGTGCGATCCTGAGTGGAAGTCTCTAATGGAAAGTTGCTGGGCATCTGATCCTATAGAAAGGCCATCATTTGCAGAAATTTCTAAGAAGCTGAGGAGTATGGCTGCTTCAATGAATGTTAAATAG | 3249 | 0.4229 | MCNKGFQCLSESETIIDHRQHFIMMDSPTVRSPVTATTTGSGSGSNDDGRRVKFLCSFLGSIMPRPQDGKLRYVGGETRIVSVSRDISFEELMGKMRELYEGVAVLKYQQPDEDLDALVSVVNDDDVVNMMEEYDKLGSGDGFTRLRIFLFSQSEQDGSANFIDGDDPERRYVDALNSLNDASELRRLQQMEFPMIGTVEDICVADQFLNPIAMENGIHSQRNGELAMSPYSLHPIPIQHQQPMGQRYNEIDAQWNPGYYSPRHHGQCHHDSRSSLVDYPSSPSGTRYRVPFPEMPDKGIDRVPDEYARHHVNHHPLYDNQPQYPENVVWLPTGAAHGDKSSFPGNLHHGSHALDGNNIREHCRTSFQRAQPHLEHPNMLPPVAIPCPERPSSRDALTVNADGKLQPTMYPNDTQNHERGCGLQHQGSGRVSDHYLGDVPIINFPPGHGSMIDGHVLPSNHVHQQVGPELGVELFPDQTLANMPHLKIPPLEERSVQYGKTSSPYGVDNNYAVPCGHAPGYTLWRNSLTPVHIGSPHEATTPHQPIDGVINTGIFRREGSPGFFVGPDSQSLWVDSSQKFSGHDGSAIPEYPYANASKLNPMTTCQENHHPIILDAIHPPHDVNAGTCLEPVQLQKSSLNMVHNNEVLKIDTHLTEVISLQSISLLGEGKQTKNKENVASVECKNSFSKPASGCGHVEKLDDKDCSAHEDSKHLADQFNILPELIASVKKAALECHDEVKPTREERVNCQIDNSNTKEETANEVEPVNAHGDLELDTENDHVDTNKIEPTKAEAEAIARGLQTIRNDDLEEIRELGSGTYGAVYHGKWKGSDVAIKRIKASCFSGRPSERARLIADFWKEALMLSSLHHPNVVSFYGIVRDGPDGSLATVTEFMVNGSLKQFLHKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKVKQHTLVSGGVRGTLPWMAPELLSGKSHMVSEKIDVYSFGIVMWELLTGDEPYADMHCASIIGGIVNNTLRPQIPTWCDPEWKSLMESCWASDPIERPSFAEISKKLRSMAASMNVK | 1082 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu04g04646 | 1082 | Gene3D | - | 70 | 154 | - | - | |
| Tsu04g04646 | 1082 | SUPERFAMILY | Protein kinase-like (PK-like) | 801 | 1070 | IPR011009 | - | |
| Tsu04g04646 | 1082 | SMART | PB1_new | 66 | 151 | IPR000270 | GO:0005515 | |
| Tsu04g04646 | 1082 | SUPERFAMILY | CAD & PB1 domains | 68 | 157 | - | - | |
| Tsu04g04646 | 1082 | CDD | PB1_UP2 | 55 | 151 | - | - | |
| Tsu04g04646 | 1082 | Pfam | Protein tyrosine and serine/threonine kinase | 810 | 1072 | IPR001245 | GO:0004672|GO:0006468 | |
| Tsu04g04646 | 1082 | PANTHER | - | 28 | 1082 | - | - | |
| Tsu04g04646 | 1082 | Gene3D | Phosphorylase Kinase; domain 1 | 794 | 895 | - | - | |
| Tsu04g04646 | 1082 | ProSitePatterns | Protein kinases ATP-binding region signature. | 815 | 836 | IPR017441 | GO:0005524 | |
| Tsu04g04646 | 1082 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 934 | 946 | IPR008271 | GO:0004672|GO:0006468 | |
| Tsu04g04646 | 1082 | ProSiteProfiles | Protein kinase domain profile. | 809 | 1076 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Tsu04g04646 | 1082 | SMART | serkin_6 | 809 | 1076 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Tsu04g04646 | 1082 | CDD | STKc_MAP3K-like | 815 | 1072 | - | - | |
| Tsu04g04646 | 1082 | MobiDBLite | consensus disorder prediction | 264 | 296 | - | - | |
| Tsu04g04646 | 1082 | Gene3D | Transferase(Phosphotransferase) domain 1 | 896 | 1082 | - | - | |
| Tsu04g04646 | 1082 | PRINTS | Tyrosine kinase catalytic domain signature | 999 | 1021 | IPR001245 | GO:0004672|GO:0006468 | |
| Tsu04g04646 | 1082 | PRINTS | Tyrosine kinase catalytic domain signature | 891 | 904 | IPR001245 | GO:0004672|GO:0006468 | |
| Tsu04g04646 | 1082 | PRINTS | Tyrosine kinase catalytic domain signature | 1043 | 1065 | IPR001245 | GO:0004672|GO:0006468 | |
| Tsu04g04646 | 1082 | PRINTS | Tyrosine kinase catalytic domain signature | 928 | 946 | IPR001245 | GO:0004672|GO:0006468 | |
| Tsu04g04646 | 1082 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 28 | 1082 | - | - | |
| Tsu04g04646 | 1082 | Pfam | PB1 domain | 67 | 152 | IPR000270 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu04g04646 | Tsu-Chr4 | 53948834 | 53954453 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu04g04646 | 46 | 1082 | MAP Kinase Kinase Kinase | AT5G57610 | 54.002 | 0.0 | 1019 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | TKL-Pl-6 | Tsu04g04646 | PK_Tyr_Ser-Thr | 2.7e-61 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu04g04646 | - | - | gmx:100779077 | 1626.3 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Tsu04g04646 | 04 | 53948834 | 53954453 | Tsu04g04646 | 04 | 53948834 | 53954453 | ECH |