Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04636 ATGCATCATAATCTGAACTTAGATCTTGTCCTTGaaccatcttcttcttcatcatcatcttcttcacctaTTATAGAGCAAAGGATATTCTCATGCAACTATTGTCAAAGAAAGTTTTACAGTTCTCAAGCTTTAGGAGGACACCAAAATGCTCATAAGCTTGAAAGGACACTTGCAAAGAAAAGTTGGGAGATAAGTTCAGCCATGCAATCTTCTAATTATGTTGAATTACCAGAACACCCTTTTGATCACAACAATCATGTTATTAGACATGGTGGTGGAAGAAAAGATAAGTTTAGTTATGGTAATTCTAAAGAAGGTGTGACTTCTTGGTCAAGGGGTTATAATACTACTACTTCTGAACATGTTCAGGAGGATATTAGCCAACTTGATTTGTCCTTAAGGCTTTGA 411 0.326 MHHNLNLDLVLEPSSSSSSSSSPIIEQRIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSWEISSAMQSSNYVELPEHPFDHNNHVIRHGGGRKDKFSYGNSKEGVTSWSRGYNTTTSEHVQEDISQLDLSLRL 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04636 136 Gene3D Classic Zinc Finger 9 84 - -
Tsu04g04636 136 PANTHER ZINC FINGER PROTEIN 2 3 136 - -
Tsu04g04636 136 ProSitePatterns Zinc finger C2H2 type domain signature. 32 52 IPR013087 -
Tsu04g04636 136 MobiDBLite consensus disorder prediction 1 22 - -
Tsu04g04636 136 PANTHER ZINC FINGER PROTEIN JAGGED 3 136 IPR045320 GO:0003700
Tsu04g04636 136 ProSiteProfiles Zinc finger C2H2 type domain profile. 30 57 IPR013087 -
Tsu04g04636 136 SUPERFAMILY beta-beta-alpha zinc fingers 26 57 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04636 Tsu-Chr4 53858866 53859276 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04636 2 136 C2H2 Transcription Factor Family AT5G57520 51.064 1.01e-27 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu04g04636 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04636 04 53858866 53859276 Tsu04g04636 04 53858866 53859276 ECH