Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04635 ATGTCACCATCTTcaccaccacaacaacaacatgaAGAATTCATATTCCGTTCCAAACTCCCAGACATTGAAATCCCAACACATCTTCCATTACACTCTTATTGTTTCCAAAACATCTCTCAATTCCATAACCGTCCATGTCTCATCAACGGCGAAACCGGCGAAATCCTAACATACTCCGACGTCCACCTCACCGTCCGCAAAATCGCCGCTGGTTTAAACACTCTCGGAATCAATCAAGGTGATGTCATCATGCTCGTCCTCCGTAACTCTCCTCAATTCGCACTCACTTTCCTCGGCGCCTCCTACCGTGGCGCCGTTATCACCACCGCAAATCCTTTCTACACCTCATCAGAACTTTCGAAACAAGCAACAGCAACAAAAACTAAACTCATCGTAACTCAATCCGCATATCTCAATAAAATCAACGATTTCGCTAAATTCAACAACATCAAAATCGTCTCCATAGATTCATCATCGCCGCCATCACCACAGTCGTCATCGGAAGAATCCACCGGTGTTGTGGATTTTTCTGTTTTAACAAATGCTGATGAAAACGACGCGCCAGAAGTTAAACTAACGCCTAACGACATCGTTGCGTTACCGTTTTCTTCAGGAACTTCAGGACTTCCTAAAGGCGTTATGTTAACACATGAAAATTTAGTTACAACTATATCACAGTTAGTAGACGGTGAAAATCCACATCAATATACTAACGGTGAGGATGTGTTGCTCTGTGTGTTACCTATGTTTCATATCTATGCACTCAATTCAATTTTACTATGTGGAATTCGATGTGGTGCTGCGGTTTTAATTGTGGAAAAATTTGAGATTAAAACATTATTGGAACTTATTGAAAAGTATAAAGTAACGGTTGCGTCGTTTGTGCCACCAATTGTATTAGCGTTGGTAAAAAGTGGTGAATcaaataaatatgatttatCTTCTATTAGAGCAATGATAACTGGTGCTGCACCTATGGGAATGGAACTTGAACATGCTGTCAAGGATAGATTGCCACAGACTGTACTTGGTCAGGGATATGGCATGACAGAGGCAGGGCCACTTTCAATTAGCCTTGCATTTGCAAAGGAACCATTCAAGACAAAACCAGGTGCATGTGGCACCGTCGTTAGAAACGCCGAGATGAAAATCGTTGATACAGAGACTGGTGCTTCTCTTCCTAGAAACAAAGCTGGTGAAATTTGCATTAGAGGCACAAAGGTTATGAAAGGATACCTAAATGATCCCGAGGCAACAAAGAGAACTATAGACAAAGAGGGATGGCTACACACAGGTGACATTGGTTTAATTGACAACGATGATGAACTCTTCATTGTTGATCGGTTAAAAGAATTGATTAAATACAAAGGATACCAAGTAGCTCCGGCTGAGCTCGAAGCGTTGTTGATTTCCCACCCAAACATTTCTGATGCTGCTGTTGTACCATTGAAAGATGAAGTTGCTGGAGAAGTACCGGTTGCATTTGTTGTAAGATCAAACGGTTCAAAGATCAGTGAGGATGAAATCAAGCAATACATTTCACAACAGGTTGTATTTTACAAGAGAATAAACAGAGTTTACTTCACAGACACTATTCCTAAAGCGGCCTCTGGCAAAATTCTGCGAAAGCAATTAACCGCAAGACTTAACGAAGGTTTGGTGGTTGCCACTTAG 1677 0.4067 MSPSSPPQQQHEEFIFRSKLPDIEIPTHLPLHSYCFQNISQFHNRPCLINGETGEILTYSDVHLTVRKIAAGLNTLGINQGDVIMLVLRNSPQFALTFLGASYRGAVITTANPFYTSSELSKQATATKTKLIVTQSAYLNKINDFAKFNNIKIVSIDSSSPPSPQSSSEESTGVVDFSVLTNADENDAPEVKLTPNDIVALPFSSGTSGLPKGVMLTHENLVTTISQLVDGENPHQYTNGEDVLLCVLPMFHIYALNSILLCGIRCGAAVLIVEKFEIKTLLELIEKYKVTVASFVPPIVLALVKSGESNKYDLSSIRAMITGAAPMGMELEHAVKDRLPQTVLGQGYGMTEAGPLSISLAFAKEPFKTKPGACGTVVRNAEMKIVDTETGASLPRNKAGEICIRGTKVMKGYLNDPEATKRTIDKEGWLHTGDIGLIDNDDELFIVDRLKELIKYKGYQVAPAELEALLISHPNISDAAVVPLKDEVAGEVPVAFVVRSNGSKISEDEIKQYISQQVVFYKRINRVYFTDTIPKAASGKILRKQLTARLNEGLVVAT 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04635 558 Pfam AMP-binding enzyme C-terminal domain 465 540 IPR025110 -
Tsu04g04635 558 Pfam AMP-binding enzyme 37 456 IPR000873 -
Tsu04g04635 558 ProSitePatterns Putative AMP-binding domain signature. 201 212 IPR020845 -
Tsu04g04635 558 CDD 4CL 25 546 - -
Tsu04g04635 558 Gene3D - 7 450 IPR042099 -
Tsu04g04635 558 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 10 550 - -
Tsu04g04635 558 SUPERFAMILY Acetyl-CoA synthetase-like 9 552 - -
Tsu04g04635 558 Gene3D - 451 554 IPR045851 -
Tsu04g04635 558 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 10 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04635 Tsu-Chr4 53848108 53854495 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04635 11 518 Monolignol Biosynthesis Gene Families AT1G51680 63.813 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04635 K01904 - gmx:100810418 860.522
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04635 04 53848108 53854495 Tsu04g04635 04 53848108 53854495 ECH