Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04613 ATGAACACGAGCCAGTTCGACGGTAACGCAGCATTCGCCGGCGGCGGATTTATGCCTTCTCAGACTACTCAAGGCGCCAACTCTCCCTTCACTCCCTCCAAGAATCGTGATAGTCAGACATTGCTTCCTTTGACGATCAAGCAGGTCAGCAATGCTGTTCAGTCAAGCGATGGTTCCAATCTTACTATTGATGGTGTCGATGTTCACACCgTTACTTTTGTAGGTAGGGTGTGCAACAAAGTTGACCAAATTACTGATTCTAAATTTGTACTTGATGATGGTACCGGAACGATTGAGTGCATTAGATGGATTAATGATCCTGTAGATTCAAATGAAGTGGATGGTATCTTGAATGGAATGTATGTGCGGCTATATGGACAATTTAAAGTTTTGCAGGgtaaaaaatgcataaatatttATTCTTTAAGGCCCGTTACTGACTTCGATGAGATTGCCAACCATTTCATTAATTGCATATATGTTCATCTATATAATTCGAGGTTACAGCGTATCCAAGCTAGCATCCCCAATCAGCAACATGTTCCCAATTCCACACAAATCACTCCCACTAAAGGTTATCAAGCTCAAGCCATAGCAGCAAATCAAATCTCTGGTCAGCATAATAATCGTCAGAAGACTGTTGAAGATTTGGTGATAGATGTTTTGACTCTTCCCGaaaacatGACAAGGAGTGAGGGAGTCCCGCGCGAATCTATTGCACAGCATCTTGGACTTCCTTTGGATAAAATCATGCTGGCTATTCAAAATCTTACTCAAGAAGGTCTCGTTTATGAAGGTCTAACTAATCACTATAAGTCAACTGTCGATGGTTGA 834 0.4089 MNTSQFDGNAAFAGGGFMPSQTTQGANSPFTPSKNRDSQTLLPLTIKQVSNAVQSSDGSNLTIDGVDVHTVTFVGRVCNKVDQITDSKFVLDDGTGTIECIRWINDPVDSNEVDGILNGMYVRLYGQFKVLQGKKCINIYSLRPVTDFDEIANHFINCIYVHLYNSRLQRIQASIPNQQHVPNSTQITPTKGYQAQAIAANQISGQHNNRQKTVEDLVIDVLTLPENMTRSEGVPRESIAQHLGLPLDKIMLAIQNLTQEGLVYEGLTNHYKSTVDG 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04613 277 SUPERFAMILY Nucleic acid-binding proteins 41 166 IPR012340 -
Tsu04g04613 277 MobiDBLite consensus disorder prediction 16 37 - -
Tsu04g04613 277 PIRSF RPA32 1 275 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu04g04613 277 SUPERFAMILY "Winged helix" DNA-binding domain 217 274 IPR036390 -
Tsu04g04613 277 Gene3D - 33 167 IPR012340 -
Tsu04g04613 277 CDD RPA2_DBD_D 70 163 - -
Tsu04g04613 277 Gene3D - 206 275 IPR036388 -
Tsu04g04613 277 Pfam Replication protein A C terminal 162 265 IPR014892 -
Tsu04g04613 277 PANTHER REPLICATION PROTEIN A-RELATED 6 276 IPR040260 -
Tsu04g04613 277 MobiDBLite consensus disorder prediction 12 37 - -
Tsu04g04613 277 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A-LIKE 6 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04613 Tsu-Chr4 53666038 53669784 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04613 1 228 Core DNA Replication Machinery Family AT3G02920 45.887 3.65e-70 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04613 K10739 - gmx:100782819 327.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04613 04 53666038 53669784 Tsu04g04613 04 53666038 53669784 ECH