Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04612 atgGACTCATCCTCTTCTTCACCCCCCACAAATACTAACAATACCTCCCTTGCTTTCTCTCTTTCCAATACTCATTTTCCCAATATTCCTTCACACTCTTCTTCCTCTCAcctctctctttttcactcATTCACCACTTTTCCTCCCTCCACACCACCATCTCTCACTCTCACAGGGAGCAACACCGTGAACACATCACCGGAGGCAACTGACGGAAGAACTACCAATCTCTCCATATTCACCGGAGGACACAAGTTTGAAGATTTCTTAGGAAGCTCCGTTGCAACAACAACCGCCACCACGTGTGCACCAACACAGCTTCACCAGTTTTCCACCGACATATATGATTCGGAGCTGAAGAAAACAATATCAGCTTGTTTCCAAGGTGGTTACCCCGCCGAACCAAACTCCGAACCTCGCAAACTGTCTCCTAAGAAAACCGTTGATAACTTCGGCCAACGCACTTCTATCTATCGCGGCGTCACCCGgcATAGATGGACCGGGAGATATGAAGCACATCTATGGGACAATAGTTGCAGAAGGGAAGGACAAAGTAGAAAAGGAAGACAAGgtgGCTATGACAAGGAAGAGAAAGCAGCTAGAGCTTATGATCTTGCTGCACTCAAGTACTGGGGtccaaccaccaccaccaacttTCCAATTTCTAACTATGAGAAGGAACTTGATGACATGAAGAACATGACTAGACAAGAGTTTGTTGCTTCACTCCGAAGGAAAAGCAGTGGTTTTTCAAGAGGTGCATCAATTTACAGAGGAGTAACAAGACACCATCAGCATGGACGATGGCAGGCAAGAATAGGCAGAGTTGCCGGAAACAAAGACCTTTACCTTGGCACTTTCAGCACACAAGAAGAAGCTGCTGAAGCATATGATATAGCAGCAATAAAATTCAGAGGACTAAATGCAGTGACAAACTTCGACATGAGTCGCTACGACGTAAAGAGCATTGCAAATAGTTCACTTCCCATAGGTGGTTTAtcaaacaagaacaaaaattcAACAGATACATCAGTATCAGAAATCAAAAGCCTCGAAGCAATTCAGTCCGATGAAAGAGATCATCCATCATCAGTTTCATCAGCAACAACCTTAAGCTTCGCGATTCCTATCAAACAAGACCCTTCTTCAGATTACTGGTCCAACATTCTCGGATTCCATAATAATACCAATAATCCTAGTGTTGTTTCTACCACACCCTTCAACATGGATTTTTCTACTCATGCACCTCCAAATAACAACAATGATAACAATGCTGGTTTTTTCAGTGGATCGGGTATCTTAAATGTTCAGCAACAAAATGGAAACGGAAATAATGGTTCTTCATCTGCATCTTCTTCAACGAGTAGTTCAATTCCATTCGCTACACCgatattttctttaaatagtAATAGTAACAGTAGTAGTAGTTATGATCAGAATGGTAATAGTAATAGTTATGGAAATAACTGGATTGGACACACAATATTCCAAACACATGCAAAACAACCAAGTCTATTTCAAACACCAATATTTGGAATGGAATGA 1545 0.4 MDSSSSSPPTNTNNTSLAFSLSNTHFPNIPSHSSSSHLSLFHSFTTFPPSTPPSLTLTGSNTVNTSPEATDGRTTNLSIFTGGHKFEDFLGSSVATTTATTCAPTQLHQFSTDIYDSELKKTISACFQGGYPAEPNSEPRKLSPKKTVDNFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGPTTTTNFPISNYEKELDDMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSSLPIGGLSNKNKNSTDTSVSEIKSLEAIQSDERDHPSSVSSATTLSFAIPIKQDPSSDYWSNILGFHNNTNNPSVVSTTPFNMDFSTHAPPNNNNDNNAGFFSGSGILNVQQQNGNGNNGSSSASSSTSSSIPFATPIFSLNSNSNSSSSYDQNGNSNSYGNNWIGHTIFQTHAKQPSLFQTPIFGME 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04612 514 MobiDBLite consensus disorder prediction 52 73 - -
Tsu04g04612 514 MobiDBLite consensus disorder prediction 409 454 - -
Tsu04g04612 514 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 24 484 - -
Tsu04g04612 514 ProSiteProfiles AP2/ERF domain profile. 256 314 IPR001471 GO:0003700|GO:0006355
Tsu04g04612 514 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 24 484 - -
Tsu04g04612 514 SUPERFAMILY DNA-binding domain 255 316 IPR016177 GO:0003677
Tsu04g04612 514 Pfam AP2 domain 157 212 IPR001471 GO:0003700|GO:0006355
Tsu04g04612 514 Pfam AP2 domain 256 306 IPR001471 GO:0003700|GO:0006355
Tsu04g04612 514 SMART rav1_2 157 226 IPR001471 GO:0003700|GO:0006355
Tsu04g04612 514 SMART rav1_2 256 320 IPR001471 GO:0003700|GO:0006355
Tsu04g04612 514 PRINTS Ethylene responsive element binding protein signature 296 316 IPR001471 GO:0003700|GO:0006355
Tsu04g04612 514 PRINTS Ethylene responsive element binding protein signature 158 169 IPR001471 GO:0003700|GO:0006355
Tsu04g04612 514 ProSiteProfiles AP2/ERF domain profile. 157 220 IPR001471 GO:0003700|GO:0006355
Tsu04g04612 514 CDD AP2 156 222 IPR001471 GO:0003700|GO:0006355
Tsu04g04612 514 Gene3D AP2/ERF domain 157 222 IPR036955 GO:0003700|GO:0006355
Tsu04g04612 514 Gene3D AP2/ERF domain 256 316 IPR036955 GO:0003700|GO:0006355
Tsu04g04612 514 SUPERFAMILY DNA-binding domain 156 222 IPR016177 GO:0003677
Tsu04g04612 514 CDD AP2 255 316 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04612 Tsu-Chr4 53652858 53657126 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04612 111 514 AP2-EREBP Transcription Factor Family AT5G57390 55.353 8.33e-145 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Tsu04g04612 AP2 9.8e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04612 K09285 - gmx:100803558 633.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04612 04 53652858 53657126 Tsu04g04612 04 53652858 53657126 ECH