Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04610 ATGGTAGCAAAGGATGCCAGACGTGTGGACATACTATGTTATCGTGTCTCCTTAAGCCAAAAACTTTTACAAGGGACTGAAATGTATGGAGAACTTCATGAAATTGTTGATCAAGCAGTGAAGAAACTTGAACCGGAGGTGGGTCCACTGACCGGCTCACCACTGAAGATTGGTAGGGGGATTGTGAACAGGCTTTCTTCAGGACCTGAGGTTCAGAAACTTTGTGGTGTTGCTCTTGAATCACTTGATTCAATGCTTTCTAAAAGGATCTTGCCTCCGACGCCCAATCCAACTATTCAAGATGCAAGTTTACTAGCACCAAATATGGTGAGGTTTGAAGATGTCACTGCAACATCCCTCACTGTTATTTTGTGTTTGGAAGATCCTTCTGGAGAAAATAATGCTGGTTATGCCGTGTGGCATCGCAAAGCTGATGATGTGAACTATCCATTGGACCCAACTTGCACAAATCTCCTACCAAATAGGAGACTCGACATCAGGGATTTACTTCCAGCTACAGAATACAGTTTCAAAGTTGTTTCCAATGATTTGAGGAAGTCGGGTATGTGTGAAGTTCAAGTCTCAACAGAGCATGGTGAGGATGAAGTTCCAAACTGTTCTGCAACAGAAAGAAGTCAGAGCCCAGTAACCAACTGTAGCAGTCTTTCCAATCCATCGTCAGTGGAAGATGAAACTAATCATAGCGACCAGACCGATAATCGATCAGATAATTATCCTATTTATCACAAGGATAGCAACCAGCTTGCTTCTGGAAATATATCTAATGATGCTATTAACTGTTCCAATTTGGGCGGAGTGGGACGACCCACTGATACAGATTCCTTGTCAGACAAGCAGGTTGTTGTAGGAATGACTGGCACTATACCTAGTTCTGATGCACTAGAGCTTGAAAACAAGCATTCAACAGAGGAACATGTAACTGAGGACATGAGCACCGATGATGCGTCAGTTCCAACGGGAAGGGAATGTGTTGCGTTAGCAGGTAGCTCAAAAGTGGGATTGCCTAATACTCCCGGTAGGCTGGAATTACTTAAAGATGGTCCAGGAAGAAAAGGTAGATCCAAATTCAGTGGCAAAGATCTAGAAAATGGATCTGGGAAAAGGGGTGGCCCTCGAGATGGAAGCACGTCCAAGAAGAGAAGTGGTGAAAGGCAAGGGGAAGACTGCGAGGGAAATGATTTTCTGGATCGGGATTTCGAGTATTATGTGAAGGTGATTAGATGGTTAGAGTGTGAAGGACACATTGAAAAGAACTTCAGACAGAAATTTCTGACATGGTACAGCTTAAGAGCAACCCCTGAAGAAATAAGGATTGTGAAAATATATGTAGATACATTTCATGAAGATCCGACTTCTCTTGCTGAGCAACTTATGGACACCTTCTCAGATTGTGTATCAAACAAGAGATCATCAGTTCCTGCAGGGTTCTGCATGAAGCTTTGGCATTGA 1470 0.432 MVAKDARRVDILCYRVSLSQKLLQGTEMYGELHEIVDQAVKKLEPEVGPLTGSPLKIGRGIVNRLSSGPEVQKLCGVALESLDSMLSKRILPPTPNPTIQDASLLAPNMVRFEDVTATSLTVILCLEDPSGENNAGYAVWHRKADDVNYPLDPTCTNLLPNRRLDIRDLLPATEYSFKVVSNDLRKSGMCEVQVSTEHGEDEVPNCSATERSQSPVTNCSSLSNPSSVEDETNHSDQTDNRSDNYPIYHKDSNQLASGNISNDAINCSNLGGVGRPTDTDSLSDKQVVVGMTGTIPSSDALELENKHSTEEHVTEDMSTDDASVPTGRECVALAGSSKVGLPNTPGRLELLKDGPGRKGRSKFSGKDLENGSGKRGGPRDGSTSKKRSGERQGEDCEGNDFLDRDFEYYVKVIRWLECEGHIEKNFRQKFLTWYSLRATPEEIRIVKIYVDTFHEDPTSLAEQLMDTFSDCVSNKRSSVPAGFCMKLWH 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04610 489 PANTHER VIN3-LIKE PROTEIN 2-RELATED 1 489 IPR044514 GO:0010048|GO:0040029
Tsu04g04610 489 PANTHER VIN3-LIKE PROTEIN 2-RELATED 1 489 - -
Tsu04g04610 489 SUPERFAMILY Fibronectin type III 106 203 IPR036116 GO:0005515
Tsu04g04610 489 MobiDBLite consensus disorder prediction 303 318 - -
Tsu04g04610 489 MobiDBLite consensus disorder prediction 232 246 - -
Tsu04g04610 489 MobiDBLite consensus disorder prediction 294 396 - -
Tsu04g04610 489 MobiDBLite consensus disorder prediction 200 231 - -
Tsu04g04610 489 MobiDBLite consensus disorder prediction 195 256 - -
Tsu04g04610 489 CDD FN3 106 180 IPR003961 GO:0005515
Tsu04g04610 489 MobiDBLite consensus disorder prediction 351 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04610 Tsu-Chr4 53620714 53623995 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04610 2 367 PHD Gene Family AT4G30200 40.415 1.88e-66 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04610 - - gmx:100794721 784.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04610 04 53620714 53623995 Tsu04g04610 04 53620714 53623995 ECH