Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04607 ATGAGGTATATTCGATCAAACAGCTTCAAGAGACTCTTCTCATTCAAAAAACGTGGTTTAGGGGAACAAGAACTTAATTctaaaagtgaagaaaaagaTAACAGCTTAAAGATTCTTCCATATGAAGAAGAATCTTGTGATAGACCAACTTGGAAATGTTTCTCTTATGAAGAGTTATTTGAAGCCACCAATGGCTTCATCTCAGaAAATATTGTTGGAAAAGGAGGGTATGCAGAAGTTTACAAAGGAATGTTGAAAAATGGTGAAGAAATTGCTGTGAAGAGATTAACAAGAACAtcaaaagatgaaagaaaagagaaagagtTTTTGACAGAGATTGGTACAATTGGTCATGTTCGTCATTCTAATGTATTGTCTCTTCTAGGTTGTTGTATTGATAATGGACTTTACTTTGTTTTTGAACTATCAACAACTGGTTCTGTTTCTTCTATTCTTCATGATGAAAAGTTGGATCCTTTAGATTGGAAAACAAGACATAAAATAGTTCTTGGAACAGCGCGTGGACTTCACTACTTGCACAAAGGTTGCAAGAGAAGAATAATCCATAGAGATATTAAGGCATCAAACATTTTATTAACAAAAGATTTTGAACCACAGATATCTGATTTTGGACTAGCAAAATGGCTTCCATCTCAATGGACTCATCATTCAATTGCTCCAATAGAAGGGACATTTGGACATTTGGCACCAGAATATTACTTGCATGGAGTGGTGGATGAGAAAACAGATGTATTTGCCTTTGGTGTGTTCTTGCTAGAAGTCATTTCTGGTAGGAAACCTGTTGATGGGTCTCACCAAAGCTTACATAGTTGGGCTAAACCAATTTTGAACAAGGGTGAGATAGAAGAGCTAGTAGATGCAAGGCTTGAAGGAGCTTATGATGTGACACAGTTAATGAGATTTGCTTTTGCTGCATCTCTTTGTATTCGGGCATCTTCCACTTGGCGACCAACCATGACTGAGATATTGGAAATAATGGAGGAGGGAGAGATGGATAAAGAAAAGTGGAAAATgccagaggaagaagaagaacaagaggaAGAATTTTGGGGTTTTGAGGATCTAGAATATGAATATGACACTTCCTTTTCAATGTCTttaattgattcaattgaaagTAATTAG 1146 0.3351 MRYIRSNSFKRLFSFKKRGLGEQELNSKSEEKDNSLKILPYEEESCDRPTWKCFSYEELFEATNGFISENIVGKGGYAEVYKGMLKNGEEIAVKRLTRTSKDERKEKEFLTEIGTIGHVRHSNVLSLLGCCIDNGLYFVFELSTTGSVSSILHDEKLDPLDWKTRHKIVLGTARGLHYLHKGCKRRIIHRDIKASNILLTKDFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYYLHGVVDEKTDVFAFGVFLLEVISGRKPVDGSHQSLHSWAKPILNKGEIEELVDARLEGAYDVTQLMRFAFAASLCIRASSTWRPTMTEILEIMEEGEMDKEKWKMPEEEEEQEEEFWGFEDLEYEYDTSFSMSLIDSIESN 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04607 381 Gene3D Transferase(Phosphotransferase) domain 1 144 359 - -
Tsu04g04607 381 PANTHER OS04G0654600 PROTEIN 28 363 - -
Tsu04g04607 381 ProSiteProfiles Protein kinase domain profile. 66 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04607 381 PANTHER OS08G0249100 PROTEIN 28 363 - -
Tsu04g04607 381 Pfam Protein tyrosine and serine/threonine kinase 70 331 IPR001245 GO:0004672|GO:0006468
Tsu04g04607 381 ProSitePatterns Protein kinases ATP-binding region signature. 72 94 IPR017441 GO:0005524
Tsu04g04607 381 SMART serkin_6 66 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04607 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Tsu04g04607 381 Gene3D Phosphorylase Kinase; domain 1 38 141 - -
Tsu04g04607 381 SUPERFAMILY Protein kinase-like (PK-like) 45 333 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04607 Tsu-Chr4 53600897 53605700 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04607 54 338 Trihelix Transcription Factor Family AT1G70460 43.390 2.67e-70 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Tsu04g04607 PK_Tyr_Ser-Thr 1.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04607 - - gmx:100305398 634.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04607 04 53600897 53605700 Tsu04g04607 04 53600897 53605700 ECH