Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04586 ATGTCCCTGGGAGGACTTATTGGTCTCTCcccatttcgtcgaggtgcaggccttgaggacctagacctcgatcgtgagcgaCGGTTCTCTGGCGTCGATGATCTTTGTCGACGAGTACTTCGCGACATCTTTGAAGCAGCGCGTGATTCTTCCACTGCCCGGAGCCGTCGGTTTTGCTCGCGGATCAGCTCGTTTTGCCCACGCATGTTGTCTGCCTGCTCGCGAACTATCACCATCTTCTTTCTATTCATCTCTCTTCAAACTTCTATAACAAGgaatttgataaaaaaaaaaaaagtgatgtcTTCGATTGAAGAGAAAAGCAAGGAAGGAAAAAAGCTACAAAAAAGCTATTTTGATGTGGTTGGTTTATGTTGTTCTTCAGAGGTACCTCTGATTGAAAACATCCTTAAACCTCTTCAAGGAATCAAAGAGGTTTCTGTCATCGTACCTTCAAGAACTGTCATCGTTGTTCATGACTCAAATCTCATTTCACAACTCCAAATTGTTAAGGCATTGAATCAAGCAAGACTAGAAGCCAATATTAGAGTATATGGaaatgaaaaacacaaaaagaaatGGCCAAGTATTTACTCAGTTACTTCTGGATTATTACTTGCACTTTCATTTCTCAAATTTGTGTATCCACCATTGAAATATCTTGCTCTTGGAGCTGTTGCTGCTGGTGCCCTTCCGATTATCTTGAAAGCTATTGTTTCCATTAGGAATGTTAGATTTGACATTAACATTCTTGCCATCATAGCAGTTATTGGGACAATTGCTATGGAAGATTATTTGGAAGCAGGCACCATTGTTTTCCTCTTCTCAATTGCAGAATGGTTAGAGTCAAGGGCTAGCCACAAGGCAAATGCAGTGATGTCGTCGTTGATGAGCATTGCTCCACAAAAAGCAGTGATAGCTGAAACAGGAGAGGTTGTAGATGTTGATGAGGTGAAAGTAAACACAGTTTTAGCAGTTAAAGCAGGAGAGGTTATACCTATTGATGGAGTTGTTTTAGATGGTAACTGTGAAGTTGATGAGAAAACATTGACTGGAGAATCATTCCCTGTAGCCAAACAAAAAGATTCTACTGTATGGGCTGGCACAATCAATTTAAATGGTTATATTAGTGTGAAGACTACTGCATTAGCTGAAGATTGTGTGGTGGCTAAAATGGCAAAGTTAGTGGAAGATGCTCAAAACAGCAAAACCAGCACTCAGAGATTGATAGACAAGTTTGCCAAGTTTTATACTCCAGCTGTTATAGTGATATCAACTCTTGTAGCAGTGGTTCCAGTTGTGTTAAAAGtacataatgaaaaatattggCTTCACTTTGCACTAGTTGTTTTAGTAAGTGCATGTCCATGTGCACTTGTTCTTTCAACACCAGTTGCAACTTTTTGTGCTTATACCAAAGCAGCTACATCTGGTCTTCTCATCAAAGGGGGTGATTCTCTTGAAACACTGGCAACAATTAAAATCATGGCTTTTGACAAAACTGGTACCATAACAAAGGGTGAATTTGTGGTCACAAATTTTCAATCTCTTTCAGATGACATTGATTCGAACACATTAATTTACTGGGTGTCAAGCATTGAGAGCAAGTCAAGCCATCCATTGGCAGAAGCAATTGTTGACCACGGAAGGTCTATCTCCATTGAACCAAATCCAGAAAAGGTGACGGAATTTGAAAATTTCCCCGGAGAAGGAATCTGTGGAAAAATTGATGACCGAGTTCTCTACATTGGAAACAAAAAAATCGCCGCAAGAGCAGGGTCTGAAACAGTTGTTCCGAGCTTAGAAGGTGAAGTTCATGGAGGAAAGACTATTGGCTACATATACTCAGGATCAACCCTAGTTGGAATTTTCTCTCTATCTGATGCTTGTCGATCAGGGGTTCAGGAGGCAATAAGGCAGCTTAAGTTGATGGGAATCAAAACCGCAATGCTCACCGGAGATTGCCAATCAGCTGCAATGCAAGCACAGGAACAGTTAGGTAATGCCTTGGAAGTAGTCCATGCAGAACTTTTACCGGAGGGCAAGGTAAAAATCATCTCAGAATTTAAAAGGGAAGGCCCAACAGCCATGCTAGGAGATGGTATCAATGATGCGCCAGCATTAGCTTTGGCTGATATCGGAATATCGATGGGGATTTCAGGTTCGGCATTAGCAACCGAAACTGGGGACATCATTCTTATGTCGAATGACCTCAGAAAAATCCCAGAAGCAATTAAGCTTGCTCGGAAAACTAGAAGGAAGGTGATAGAGAACATTATATTGCCCGTGATCACTAAGGGTGCAGTCCTTGCCTTGGCAATTTCTGGTCACCCAATTGTTTGGGCAGCAGTTCTTGCTGATGTTGGAACATGTCTGTTGGTCATCTTAAACAGCATGTTACTTTTGCGAAAAAGTCACAAACATAGCGGAAAAAGTTGTAAATCATCCTCTCAACATCATGTTCACAAAAATGGATGTGGCGACACTAACAGCGGATCCTCTCATCATGATAAACATCACCAACACCATCAACGTCATAGCCATAACCATTGTTGCTCAGAAAAGGCTGAGCCCCAGAAGTGTGCCTCCCAGTCATGTTCCTCAAAGAATCCACCCTGCACTTCAAATCCAAGTTTAAGTGGAAATGTTGATCATCTCAAAAACATGGAGAATCATGATCAATGTAAAGGAAGTGATGAATTACATGAATCAGATCACTGTCATCACGGAAAATGTGACAAGAGTCAAGATGTAGTACAGAAGCATGATATTGAAAACAAGTGTTGTTCAGATTCACACAATGTGGCTCTAAATGCTGAAGATACTGGTGCAGCTTCGATACACAGTCATGGCAATTGTCTAGCACATAAGTCCCATGGGGAAAAACACTGTCACAAACAAAATATCGACAAGGTTACTCGTGATAGTGGCTCTCCATGCCATCTTAATCCctgtgatgaaaaagaaagcCAACAATTTACTAAGCATTGCCACTCAAACCATGGTTGTGAAAATCTGCACGACCATGGAACCATTCATGACATTCACCATAAAAAATCAGGCTGTCATTCTGATTTTAAGGAGCACGAGACAGATGAAATATCCATCGACATCATAACCGAGCACATTGAATCATCCTCAAAGCACGGCTGTTCAAGTTTGgcagagaaagaaaaagattcCTGTAAAGACTGCTCCAAACCATGTGAGATTATGCCTGTTGAGTGTGGTGGCTGTGAGGTTTTAAATGAGAAAGAAGTTAGTTCATGTTGCAATAATGAGTGTTCTTCAAAGGAATCGATCGAATCATCAATTATGCATGCTTGTATAAGTTTTGACAAGAGAGAAGTTGGTGGATGTTGCAAGAGTTACATGAAGGAATGCTGTGGCAGGCATGGACATTCAGGAGCTGGTAGTTTTGTAGGAGGTTTATCAGAAATAGTTACAGAATAG 3453 0.3936 MSLGGLIGLSPFRRGAGLEDLDLDRERRFSGVDDLCRRVLRDIFEAARDSSTARSRRFCSRISSFCPRMLSACSRTITIFFLFISLQTSITRNLIKKKKVMSSIEEKSKEGKKLQKSYFDVVGLCCSSEVPLIENILKPLQGIKEVSVIVPSRTVIVVHDSNLISQLQIVKALNQARLEANIRVYGNEKHKKKWPSIYSVTSGLLLALSFLKFVYPPLKYLALGAVAAGALPIILKAIVSIRNVRFDINILAIIAVIGTIAMEDYLEAGTIVFLFSIAEWLESRASHKANAVMSSLMSIAPQKAVIAETGEVVDVDEVKVNTVLAVKAGEVIPIDGVVLDGNCEVDEKTLTGESFPVAKQKDSTVWAGTINLNGYISVKTTALAEDCVVAKMAKLVEDAQNSKTSTQRLIDKFAKFYTPAVIVISTLVAVVPVVLKVHNEKYWLHFALVVLVSACPCALVLSTPVATFCAYTKAATSGLLIKGGDSLETLATIKIMAFDKTGTITKGEFVVTNFQSLSDDIDSNTLIYWVSSIESKSSHPLAEAIVDHGRSISIEPNPEKVTEFENFPGEGICGKIDDRVLYIGNKKIAARAGSETVVPSLEGEVHGGKTIGYIYSGSTLVGIFSLSDACRSGVQEAIRQLKLMGIKTAMLTGDCQSAAMQAQEQLGNALEVVHAELLPEGKVKIISEFKREGPTAMLGDGINDAPALALADIGISMGISGSALATETGDIILMSNDLRKIPEAIKLARKTRRKVIENIILPVITKGAVLALAISGHPIVWAAVLADVGTCLLVILNSMLLLRKSHKHSGKSCKSSSQHHVHKNGCGDTNSGSSHHDKHHQHHQRHSHNHCCSEKAEPQKCASQSCSSKNPPCTSNPSLSGNVDHLKNMENHDQCKGSDELHESDHCHHGKCDKSQDVVQKHDIENKCCSDSHNVALNAEDTGAASIHSHGNCLAHKSHGEKHCHKQNIDKVTRDSGSPCHLNPCDEKESQQFTKHCHSNHGCENLHDHGTIHDIHHKKSGCHSDFKEHETDEISIDIITEHIESSSKHGCSSLAEKEKDSCKDCSKPCEIMPVECGGCEVLNEKEVSSCCNNECSSKESIESSIMHACISFDKREVGGCCKSYMKECCGRHGHSGAGSFVGGLSEIVTE 1150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04586 1150 Gene3D - 111 184 - -
Tsu04g04586 1150 PRINTS P-type cation-transporting ATPase superfamily signature 346 360 - -
Tsu04g04586 1150 PRINTS P-type cation-transporting ATPase superfamily signature 497 511 - -
Tsu04g04586 1150 PRINTS P-type cation-transporting ATPase superfamily signature 644 654 - -
Tsu04g04586 1150 PRINTS P-type cation-transporting ATPase superfamily signature 698 717 - -
Tsu04g04586 1150 PRINTS P-type cation-transporting ATPase superfamily signature 722 734 - -
Tsu04g04586 1150 PRINTS P-type cation-transporting ATPase superfamily signature 622 633 - -
Tsu04g04586 1150 TIGRFAM ATPase-IB2_Cd: cadmium-translocating P-type ATPase 248 590 - -
Tsu04g04586 1150 PRINTS H+-transporting ATPase (proton pump) signature 730 755 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu04g04586 1150 PRINTS H+-transporting ATPase (proton pump) signature 698 714 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu04g04586 1150 Gene3D - 508 630 IPR023299 GO:0000166
Tsu04g04586 1150 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA4-RELATED 103 1025 - -
Tsu04g04586 1150 Pfam haloacid dehalogenase-like hydrolase 493 712 - -
Tsu04g04586 1150 SUPERFAMILY HAD-like 497 799 IPR036412 -
Tsu04g04586 1150 SFLD p-type atpase 480 751 IPR044492 -
Tsu04g04586 1150 ProSitePatterns E1-E2 ATPases phosphorylation site. 499 505 IPR018303 -
Tsu04g04586 1150 MobiDBLite consensus disorder prediction 809 849 - -
Tsu04g04586 1150 CDD P-type_ATPase_HM 202 800 - -
Tsu04g04586 1150 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 103 1025 - -
Tsu04g04586 1150 SUPERFAMILY Calcium ATPase, transmembrane domain M 248 491 IPR023298 -
Tsu04g04586 1150 SUPERFAMILY Calcium ATPase, transduction domain A 311 396 IPR008250 -
Tsu04g04586 1150 Pfam E1-E2 ATPase 307 475 - -
Tsu04g04586 1150 Gene3D - 286 400 - -
Tsu04g04586 1150 Gene3D - 488 749 IPR023214 -
Tsu04g04586 1150 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 248 801 IPR027256 GO:0006812|GO:0016021|GO:0019829
Tsu04g04586 1150 SFLD Haloacid Dehalogenase 480 751 - -
Tsu04g04586 1150 ProSiteProfiles Heavy-metal-associated domain profile. 116 182 IPR006121 GO:0046872
Tsu04g04586 1150 SUPERFAMILY HMA, heavy metal-associated domain 113 181 IPR036163 GO:0046872
Tsu04g04586 1150 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 271 770 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04586 Tsu-Chr4 53424654 53439202 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04586 112 1150 Primary Pumps ATPases AT4G30110 54.000 0.0 1045
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04586 K01534 - gmx:100817567 1384.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04586 04 53424654 53439202 Tsu04g04586 04 53424654 53439202 ECH