Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04576 AtgagattgttggagtttgaGTGTTTGTTGTTGATTATTCTATCTgcttttttggtttttgggAAAGCTGAGATTTACATAGTAACTGTTGAAGGTGAACCTATTATAAGTTATTCGGGGGGTATTGATGAGTTTAAAGCTACTGCTGTGGAATCTGATGAAAAAATTGATACCACTAGTGAACTGGTTACTTCTTACGGTCGTCATCTTGAAAAAAGACATGATATGATTCTAGGGACGCTGTTTGAGGAAGGGACATACAAGAAACTCTATAGCTATCGACATCTTATAAATGGTTTTGCTGTTCATATTTCCCCGGAACAGGCAGAAACTCTAAGCCATGCTCCTGGAGTGAAATCTGTTGAGAGGGACTGGAAAGTGAAGAGACTTACCACACATACTCCACAGTTTTTAGGGCTTCCAACTGGGGTATGGCCAACTGGAGGTGGCTTTGATAGAGCTGGAGAAGATATTGTTATTGGATTTATAGACTCAGGGATATATCCTCATCACCCGAGTTTTTCAACTCATAATTCTGAACCATATGAGCCAGTTCCAAAGTATAGAGGTAAATGTGAAGTTGATCCAGATACTAAAAGAAATTTCTGCAATGGGAAGATTGTTGGAGCACAACACTTTGCACAAGCTGCAATAGCTTCTGGAGCATTCAATCCTTCAGTTGATTTTGCATCTCCTCTAGATGGGGATGGACATGGAAGTCATACAGCCTCTATTGCAGCTGGTAATAATGGAATTCCTGTGAGGATGCATGGGCATGAATTTGGGAAAGCAAGTGGGATGGCTCCTCGTGCCAGGATTGCTGTATACAAGGCACTCTATAGACTCTTCGGAGGGTTTGTTGCAGATGTAGTTGCTGCAATTGATCAGGCTGTATATGATGGAGTGGATATACTCAGTCTTTCAGTTGGACCCAACAGTCCTCCAGCAGCCGGCAAAACTACATTTTTGAACCCTTTTGACGCTACACTTCTTGGAGCTGTGAAGGCTGGTGTATTTGTTGCACAGGCTGCTGGGAATGGCGGTCCATTCCCTAAGACAATGGTTTCATATAGTCCGTGGATAGCATCTGTAGCCGCTGCAATTGATGATCGTAGAtacaaaaatcatttgatgcttGGAAATGGAAAAATCTTAGCTGGACTTGGGTTATCACCTTCTACACATTTAAACCGAACATACACATTGGTTGCTGCAAATGATGTGCTGCTAGATTCTTCGGTTATGAAGTACAGCCCAACAGATTGCCAAAGACCAGAagtttttaacaaaaaattgatagaGGGAAATATTCTTCTGTGTGGATATTCTTTCAACTTTGTTGTTGGCTCTTCCTCAATCAAGAAAGTATCAGAAACAGCAAAGGCCCTTGGTGCAGCTGGATTTGTTCTATGTGTTGAAAATGTTTCCCCTGGAGCAAAATTTGATCCTGTCCCAGTTGGCCTTCCAGGGATTCTTATCTCAGATGTCAGCAATTCAAAGAAACTTATAGACTATTATAATATCTCTACACCAAGAGACTGGACTGGACGGGTGAAGAGTTTCAAAGGATTAGGTAAAATCGGTGAAGGTTTGATACCCATTCTACATAAGTCTGCACCGCAGGTGGCATTATTCTCTGCTAGAGGGCCAAATATAAAGGACTTCAACTTCCAAGAGGCGGATCTTCTCAAACCAGATATATTAGCTCCTGGTTCATTGATTTGGGCTGCTTGGAGTCCAAATGGAACTGATGAGGCAAATTATGTTGGCGAGGGATTTGCGATGATATCTGGAACTAGCATGTCTGCACCACATATAGCTGGAATTGCTGCTCTTATAAAGCAGAAGCATCCACATTGGAGCCCTGCTGCCATTAAATCAGCATTGATGACAACATCGACAACTCTAGACAGAGCAGGGAATCCTCTTCTAGCACAGCAAACTTCTGAAACAGAAGCTATTAAGTTCGTAAAAGCTACCCCTTTTGACTATGGAAGTGGGCATGTTGATCCAACAGCTGCCTTGGACCCTGGCCTTATTTTTGATGCAGGATATGAGGATTATCTAGGATTCTTATGCACAACACCTGGTATCGATGTTCATGAGATAAGGAACTACACTCACGTGCCATGTAACAATACTATGGGAAAACCGTCGAATTTAAACACTCCATCAATCACAATTTCCCATCTCGTGGGAACTCAAGCTGTCCACCGCACCGTAACCAATGTTGCCGAGGAAGAAACCTATGTGATCACTGCCAGAATGGAACCATCTGTTGCCATTGAAGTCAACCCTCCTGCAATGACTATCAATGCAGGCACATCACGTCAGTTTACTGTAACACTCACGTCTCGCTCTGTGACAGGAAGTTACAGTTTTGGTGAAGTTTTAATGAAAGGGAGCAGAGGTCATAAGGTGAGGATCCCTGTTGTGGCCAAAGGATTCCCACGATAA 2457 0.416 MRLLEFECLLLIILSAFLVFGKAEIYIVTVEGEPIISYSGGIDEFKATAVESDEKIDTTSELVTSYGRHLEKRHDMILGTLFEEGTYKKLYSYRHLINGFAVHISPEQAETLSHAPGVKSVERDWKVKRLTTHTPQFLGLPTGVWPTGGGFDRAGEDIVIGFIDSGIYPHHPSFSTHNSEPYEPVPKYRGKCEVDPDTKRNFCNGKIVGAQHFAQAAIASGAFNPSVDFASPLDGDGHGSHTASIAAGNNGIPVRMHGHEFGKASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVYDGVDILSLSVGPNSPPAAGKTTFLNPFDATLLGAVKAGVFVAQAAGNGGPFPKTMVSYSPWIASVAAAIDDRRYKNHLMLGNGKILAGLGLSPSTHLNRTYTLVAANDVLLDSSVMKYSPTDCQRPEVFNKKLIEGNILLCGYSFNFVVGSSSIKKVSETAKALGAAGFVLCVENVSPGAKFDPVPVGLPGILISDVSNSKKLIDYYNISTPRDWTGRVKSFKGLGKIGEGLIPILHKSAPQVALFSARGPNIKDFNFQEADLLKPDILAPGSLIWAAWSPNGTDEANYVGEGFAMISGTSMSAPHIAGIAALIKQKHPHWSPAAIKSALMTTSTTLDRAGNPLLAQQTSETEAIKFVKATPFDYGSGHVDPTAALDPGLIFDAGYEDYLGFLCTTPGIDVHEIRNYTHVPCNNTMGKPSNLNTPSITISHLVGTQAVHRTVTNVAEEETYVITARMEPSVAIEVNPPAMTINAGTSRQFTVTLTSRSVTGSYSFGEVLMKGSRGHKVRIPVVAKGFPR 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04576 818 Gene3D - 692 815 - -
Tsu04g04576 818 SUPERFAMILY Protease propeptides/inhibitors 87 127 - -
Tsu04g04576 818 Pfam Subtilase family 155 639 IPR000209 GO:0006508|GO:0008236
Tsu04g04576 818 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 15 817 IPR045051 -
Tsu04g04576 818 SUPERFAMILY Subtilisin-like 130 679 IPR036852 GO:0004252|GO:0006508
Tsu04g04576 818 CDD Peptidases_S8_3 131 634 IPR034197 -
Tsu04g04576 818 PANTHER CUCUMISIN-RELATED 15 817 - -
Tsu04g04576 818 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 21 129 IPR037045 -
Tsu04g04576 818 PRINTS Subtilisin serine protease family (S8) signature 597 613 IPR015500 -
Tsu04g04576 818 PRINTS Subtilisin serine protease family (S8) signature 155 174 IPR015500 -
Tsu04g04576 818 PRINTS Subtilisin serine protease family (S8) signature 234 247 IPR015500 -
Tsu04g04576 818 Pfam Peptidase inhibitor I9 26 128 IPR010259 -
Tsu04g04576 818 Gene3D Peptidase S8/S53 domain 157 688 IPR036852 GO:0004252|GO:0006508
Tsu04g04576 818 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 160 171 IPR023827 -
Tsu04g04576 818 CDD PA_subtilisin_like 379 515 - -
Tsu04g04576 818 Pfam Fibronectin type-III domain 720 812 IPR041469 -
Tsu04g04576 818 Gene3D - 370 535 - -
Tsu04g04576 818 ProSiteProfiles Serine proteases, subtilase domain profile. 124 675 - -
Tsu04g04576 818 ProSitePatterns Serine proteases, subtilase family, serine active site. 598 608 IPR023828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04576 Tsu-Chr4 53339606 53345375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04576 4 818 Subtilisin-like Serine Gene Family AT4G30020 79.315 0.0 1343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04576 - - gmx:100787619 1485.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04576 04 53339606 53345375 Tsu04g04576 04 53339606 53345375 ECH
Tsu04g04576 04 53339606 53345375 Tsu08g02768 08 42512200 42521908 PCT