Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04573 aTGTCTTCGTGTTTGAGTGGAACAGGAGCAAGATTTGATTTAGACATAGTTAAATCACCACCATGTTCATGGAGTAGAACAACATCATCACAAAcatcttcatcaccatcttcaacaATCTCCGAATCAAGTAATTCACCACTTATTACAATCTCAACCACTAAACCCCGAACCCCTAGAAAACGACCCAACCAAACCTACAACGAAGCTGCAACACTTCTTTCAACTGCATATCCGAACCTCTTCACTACTCCTAACCTaaaaaccaatccaaataaTAAATTCACCAAATCAGAAAAAACAACTCATGAATTCGATTCTTCTGAACTTTTTTTACCTTTCGGAGTTTTTGACACGTCATCATCTTTTTTACTTCACGGCCCAATTCATCAGCCCATTAGGCCCAATTTCCCTTCCGAGCCCAAACCGGTGAAACCATGTCAGAGTCCCGGAGAAATTAGTTCAATGGTCAAATCCCTAGAATTGAacgatgatggtgatgatgatttcGACGCCGAATCGATTCTCGACGAGGAAATTGAAGAAGGAATTGATAGTATTATGGGTGGAAGAATTGAACAAGATGAATCTAAtgtctcttctttctctcatcaTCATCCATGGATTGGTTTTGGCGGGAAATTCGATTTCCGGTTAGGGTTACAGAGAGCTGGAGTCAGAGCTCTGAGACATGTTGATGAAGGTAATTGGTGGAATTTTCCGGCGGTTGATATGCTTAAAATTTCGCCTAAAATATGCAGTGTCGGCAACAAACCAACGGCGCCGGTGactgaaaagaagaagaaaaagaaagtagtTGCGGCGGTGGAGAAACCGAAGGAGGAGTTATTGAAAGAAACAGAGTTGCCAAAGTCGAAAATCAACGGtttgttgttgaaattgaaTTACGACGGCGTTCGGAAAGCTTGGTCTGACCGGGGTACACCGTTCGCCGACGACAGCCCTGTCTCCGATGCTCCTGGAAATGATGTCAATGCACGGTTGTCACAAATTGATTTGTTGTGGGAGAATGGAGGAGGAAGTGGTGGTGTAAGAGAAGCTAGTGTGTTACGCTACAAAGAAAAACGTCGTACACGTCTCTTCTCTAAGAAGATTAGATATCAAGTCAGGAAAGTCAATGCAGATCGACGGCCAAGAATGAAGGTATGA 1170 0.3889 MSSCLSGTGARFDLDIVKSPPCSWSRTTSSQTSSSPSSTISESSNSPLITISTTKPRTPRKRPNQTYNEAATLLSTAYPNLFTTPNLKTNPNNKFTKSEKTTHEFDSSELFLPFGVFDTSSSFLLHGPIHQPIRPNFPSEPKPVKPCQSPGEISSMVKSLELNDDGDDDFDAESILDEEIEEGIDSIMGGRIEQDESNVSSFSHHHPWIGFGGKFDFRLGLQRAGVRALRHVDEGNWWNFPAVDMLKISPKICSVGNKPTAPVTEKKKKKKVVAAVEKPKEELLKETELPKSKINGLLLKLNYDGVRKAWSDRGTPFADDSPVSDAPGNDVNARLSQIDLLWENGGGSGGVREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKV 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04573 389 MobiDBLite consensus disorder prediction 22 64 - -
Tsu04g04573 389 PANTHER OS02G0148000 PROTEIN 1 388 - -
Tsu04g04573 389 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 388 - -
Tsu04g04573 389 Pfam CCT motif 352 388 IPR010402 GO:0005515
Tsu04g04573 389 ProSiteProfiles CCT domain profile. 352 389 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04573 Tsu-Chr4 53316115 53320385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04573 264 388 C2C2-CO-like Transcription Factor Family AT1G25440 40.559 2.55e-19 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu04g04573 CCT 2.7e-13 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04573 - - aprc:113845796 417.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04573 04 53316115 53320385 Tsu04g04573 04 53316115 53320385 ECH
Tsu04g04573 04 53316115 53320385 Tsu08g02754 08 42169967 42171280 PCT