Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04570 ATGCGTCCACCAGCAACACAAGTCAGTTATAAAGTAGGAGACAAAATTGAGGTTTGCAGCAAAGAAGAAGGGTTTATGGGTTCGTACTACGAAGCCACAATTGCTTCATGCCTTGAGAATGGGAAATATGAGGTTCTTTACAAAACCATACTTGAAGATGACGAATCAGGACCTCTTAAGGAGACACTTTTCTTGAAGGATATTCGTCCAATACCACCACGTGTCCGAAAATCTCGCAGGTTCCAACTCAACCAAAGAGTTGATGTTTTTTATAATGATGGCTGGTGGTTAGGGATAATCACTAGTGAGAAGATCCTCATTCGAAATCGTTATTACATTAGGGTGTACTTTAGCACTCTCGGTAGAATTATGTATTGTCCTTGTACTCGGATTAGGGTTCACCAAGAGTTGATTTATGGAGAGTGGATCTCATCTAGATTCATATAA 447 0.4004 MRPPATQVSYKVGDKIEVCSKEEGFMGSYYEATIASCLENGKYEVLYKTILEDDESGPLKETLFLKDIRPIPPRVRKSRRFQLNQRVDVFYNDGWWLGIITSEKILIRNRYYIRVYFSTLGRIMYCPCTRIRVHQELIYGEWISSRFI 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04570 148 PANTHER - 7 144 - -
Tsu04g04570 148 Gene3D - 5 77 - -
Tsu04g04570 148 Pfam Agenet domain 13 73 IPR008395 -
Tsu04g04570 148 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 7 144 - -
Tsu04g04570 148 SMART agenet_At_2 8 76 IPR014002 -
Tsu04g04570 148 SMART agenet_At_2 79 139 IPR014002 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04570 Tsu-Chr4 53299856 53300302 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04570 20 136 PHD Transcription Factor Family AT5G58610 30.147 1.90e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04570 - - cam:101489110 182.57