Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04559 ATGAATTTGTCAAAGGGTTTTCCTCCTACAGATTGTGATTTAGAGGCTGGTTCTCCCAATGCTAATACATGTTCTGCTGATTTAGTTGGTGAAGACAACACATCTGATCCATTTGATATTATCAGAACAAAGAATGCTTCCATTCAACGACTCAATCGTTGGAGGcAAGCTGcacttgtgcttaatgcttctCGTCGATTTCGTTACACCTTGGACTTGAAGAAAGAAGAGGAGAGGAAGCAAACATTGAGGAAGATTATAGTGCATATACGAGCCATTCAAGCTGCATATCGTTTCAAGGAAGCTGAGAAGAACACAAATAAAACCATCCTACCTCCTTCAACTTCAAGCTCTAATGGAGACTTTTCAATTGGACAAGAGCAactttcttcaatctcaagagAGCATGATATTAATGCTCTGAAAGAATATGGAGGGGTTGTAGGGTTGTCAAATTTGTTGAAAACCAATTTAGTGAAGGGGGCTAAAGGTGATGAGGCTAACTTGGTAATCCGAAGGAATGCGTTTGGTTCCAACAATTACCCTCGAAAGAAAGGAAGAAGTTTTTTGATGTTTATCTGGGATGCTTGCAAGGACTTGACCTTGATTATTTTAATGGTGGCTGCTGTGGCTTCATTAGCATTAGGGATAAAATCTGAGGGTATTAAGGAAGGATGGTATGATGGAGGAAGCATTGCTTTTGCAGTTTTTCTTGTTATTGCTGTTACAGCCATAACCGATTATAAGCAGTCTCTTCAGTTTGAAGATTTAAATGAGCATAAAAGAAACATACATTTTCAGGTTATTAGAGATGGCAGAAGAGTTGAGATCTCCATATATGATGTTGTTGTAGGTGATGTTATACCCCTCAATATTGGTAACCAGGTCCCTGCCGATGGAATTTTGATCACCAGCCACTCTCTTGCAATTGATGAATCAAGCATGACCGGGGAGAGCAAGATTGTTAATAAGCATTCTAAGGAACCTTTTTTGATGTCTGGATGTAAAGTTGCCGATGGAAGCGGCACTATGCTGGTAACTGCTGTTGGTACTAATACTGAATGGGGGCTTCTAATGGCTAGCATTTCAGAAGACACCGGTGAAGAAACACCTTTGCAGGTACGCTTGAATGGCCTTGCTACCTTCATCGGTATTGCTGGACTCACTGTAGCTGTCATTGTTCTAGTTGTGCTACTGGCCAGATATTTCACTGGGCACACTGAAAACCCAGACGGAAGTGTTCAATTTATAGCAGGAAAGACCAGGTTCGGTGATGCTCTTAATGGTGTAATTAAGATAGCCACTGTTGCGATCACCATCGTAGTGGTTGCAGTGCCTGAAGGACTCCCTTTAGCAGTTACCTTAACACTTGCCTACtcaatgaaaaaaatgatgGCAGATAAAGCTTTGGTGAGGAGGCTTTCTGCCTGTGAGACAATGGGATCAGCCACAACCATTTGCAGTGATAAGACTGGAACGTTGACTATGAATCAGATGACTGTGGTTGAGGCATGTGTTGGCGGGAAAAAGATTATTCCTCCTAATGATAAGTCACAGATCTCTCCTATCCTTCACTCTTTGCTAATTGAAGGTGTTGCACAGAACACTAATGGAAGTGTTTTTGTACCTAAGGGTGGAAATGGTGTCGAGGTTTCTGGATCACCAACAGAAAAGGCAATTTTACATTGGGGATTTCAGCTTGGGATGGATTTTGAGGCTGCTAGATCAgaatcatcaatcatacatgTCTTTCCATTCAACTCAGACAAAAAAAGAGGCGGAGTAGCACTACAGAAGCCTGAAGGTGGAATCCATATACATTGGAAAGGTGCAGCTGAGATAGTCCTTGCCTTCTGCACTCGGTATTATGATACAAATGATCAGTTGGTGGATATGGATGAACAGAAGATGacagtttttaaaaatgttattgaAGACATGGCTGCTGACAGTCTACGCTGTGTTGCCATTGCATATAGATTATTAGATGAAATGGAGAACATTCCAACCTGTGAAGAAAAAATTGCTCACTGGTTACCAGAGGATGATCTTGTTTTACTAGCTATTGTTGGTCTGAAGGATCCTTGTCGACCTGGTGTCAAAGATGCAGTGCACCTTTGCCAAAAAGCTGGGGTTAAGGTAAAAATGGTCACTGGTGACAACGTTAAAACTGCAAAAGCAATTGCTGTGGAATGTGGAATACTTGGTTCATTTTCTGATGCTACACAGCCAAACATCATTGAAGGCAAAACATTCCGAGCTTTGTCAGATGGACAGAGAGAAGAAATTGTTGAAAGGATCTTGGTTATGGGACGTTCGTCTCCTAATGACAAGCTTTTGCTTGTGCAAGCATTGAGGAGGAAGGGGCATGTTGTGGCTGTAACAGGAGATGGAACAAATGATGCTCCTGCACTACATGAGGCCGATATAGGTCTTGCAATGGGCATTCAAGGTACAGAAGTTGCTAAAGAGAGCTCCGATATCATTATTTTGGACGACAATTTTGCTTCTGTTGTGAAGGTTGTCAAATGGGGGCGATCTGTGTACGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAGTCAATATAGCAGCTCTTGTTATCAATACCATCGCTTCATTTTCCACTGGTGAAGTCCCACTAAACACAGTACAGCTTCTTTGGGTAAATCTAATCATGGATACTCTTGGAGCACTAGCCTTGGCAACTGAACCACCAACTGATCACCTTATGGATCAGCTTCCAGTGGGTCGAAGaGAATCTCTTGTAACAAATATTTTGTGGAGGAATCTACTAATACAGGCAATGTACCAAGTTTCTGTCTTGCTTATACTCAATTTCCAAGGCAGGAACATACTGAGTCTGAGGCACGAAAGCAACGACTTTGCACTCAAAGTGAAGAACACTATAATATTCAATGCATTTGTTCTTTGTCAAGTCTTTAATGAATTTAATGCACGAAAGCCAGATGAATTCAACATTTTCAAGGGAGTTACCAGAAATTACCTATTTATGGTGATAGTGGGATTAACTATAGTACTCCAGATTGTCATCATCGAATTTCTTGGAACTTTCACTAAAACAGTCAAGCTTAACTGGAAGCAGTGGCTCATCTGTGTCATTATAGGATTTATCAGCTGGCCTCTGGCCGTGGTTGGAAAACTGATACCTGTACCAGCAGCGACTCCCATGAATAACTGTTTTCGAAGATTTCGTCATGAAAGAACTAAAAGAAAGATGGAATCTGAAGCTTCTCAGTAG 3264 0.4026 MNLSKGFPPTDCDLEAGSPNANTCSADLVGEDNTSDPFDIIRTKNASIQRLNRWRQAALVLNASRRFRYTLDLKKEEERKQTLRKIIVHIRAIQAAYRFKEAEKNTNKTILPPSTSSSNGDFSIGQEQLSSISREHDINALKEYGGVVGLSNLLKTNLVKGAKGDEANLVIRRNAFGSNNYPRKKGRSFLMFIWDACKDLTLIILMVAAVASLALGIKSEGIKEGWYDGGSIAFAVFLVIAVTAITDYKQSLQFEDLNEHKRNIHFQVIRDGRRVEISIYDVVVGDVIPLNIGNQVPADGILITSHSLAIDESSMTGESKIVNKHSKEPFLMSGCKVADGSGTMLVTAVGTNTEWGLLMASISEDTGEETPLQVRLNGLATFIGIAGLTVAVIVLVVLLARYFTGHTENPDGSVQFIAGKTRFGDALNGVIKIATVAITIVVVAVPEGLPLAVTLTLAYSMKKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEACVGGKKIIPPNDKSQISPILHSLLIEGVAQNTNGSVFVPKGGNGVEVSGSPTEKAILHWGFQLGMDFEAARSESSIIHVFPFNSDKKRGGVALQKPEGGIHIHWKGAAEIVLAFCTRYYDTNDQLVDMDEQKMTVFKNVIEDMAADSLRCVAIAYRLLDEMENIPTCEEKIAHWLPEDDLVLLAIVGLKDPCRPGVKDAVHLCQKAGVKVKMVTGDNVKTAKAIAVECGILGSFSDATQPNIIEGKTFRALSDGQREEIVERILVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVKWGRSVYANIQKFIQFQLTVNIAALVINTIASFSTGEVPLNTVQLLWVNLIMDTLGALALATEPPTDHLMDQLPVGRRESLVTNILWRNLLIQAMYQVSVLLILNFQGRNILSLRHESNDFALKVKNTIIFNAFVLCQVFNEFNARKPDEFNIFKGVTRNYLFMVIVGLTIVLQIVIIEFLGTFTKTVKLNWKQWLICVIIGFISWPLAVVGKLIPVPAATPMNNCFRRFRHERTKRKMESEASQ 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04559 1087 Gene3D - 484 840 IPR023214 -
Tsu04g04559 1087 PANTHER CATION TRANSPORTING ATPASE 26 1071 - -
Tsu04g04559 1087 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 427 511 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu04g04559 1087 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 762 875 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu04g04559 1087 PRINTS P-type cation-transporting ATPase superfamily signature 710 720 - -
Tsu04g04559 1087 PRINTS P-type cation-transporting ATPase superfamily signature 688 699 - -
Tsu04g04559 1087 PRINTS P-type cation-transporting ATPase superfamily signature 795 814 - -
Tsu04g04559 1087 PRINTS P-type cation-transporting ATPase superfamily signature 487 501 - -
Tsu04g04559 1087 PRINTS P-type cation-transporting ATPase superfamily signature 819 831 - -
Tsu04g04559 1087 PRINTS P-type cation-transporting ATPase superfamily signature 311 325 - -
Tsu04g04559 1087 CDD P-type_ATPase_Ca_PMCA-like 172 927 - -
Tsu04g04559 1087 ProSitePatterns E1-E2 ATPases phosphorylation site. 489 495 IPR018303 -
Tsu04g04559 1087 Gene3D - 497 695 IPR023299 GO:0000166
Tsu04g04559 1087 SFLD C1.7: P-type atpase like 469 847 - -
Tsu04g04559 1087 SUPERFAMILY Calcium ATPase, transduction domain A 264 360 IPR008250 -
Tsu04g04559 1087 Gene3D - 195 1048 - -
Tsu04g04559 1087 Pfam haloacid dehalogenase-like hydrolase 484 809 - -
Tsu04g04559 1087 Pfam E1-E2 ATPase 265 465 - -
Tsu04g04559 1087 Pfam Cation transporter/ATPase, N-terminus 146 212 IPR004014 -
Tsu04g04559 1087 SFLD p-type atpase 469 847 IPR044492 -
Tsu04g04559 1087 PANTHER CALCIUM-TRANSPORTING ATPASE 26 1071 - -
Tsu04g04559 1087 Gene3D - 46 102 - -
Tsu04g04559 1087 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 494 692 IPR023299 GO:0000166
Tsu04g04559 1087 Pfam Cation transporting ATPase, C-terminus 880 1057 IPR006068 -
Tsu04g04559 1087 Pfam Ca2+-ATPase N terminal autoinhibitory domain 36 78 IPR024750 GO:0005516
Tsu04g04559 1087 Gene3D - 171 363 - -
Tsu04g04559 1087 SUPERFAMILY Calcium ATPase, transmembrane domain M 145 1059 IPR023298 -
Tsu04g04559 1087 SMART Cation_ATPase_N_a_2 143 217 IPR004014 -
Tsu04g04559 1087 SUPERFAMILY HAD-like 485 900 IPR036412 -
Tsu04g04559 1087 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 135 1059 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04559 Tsu-Chr4 53207197 53216575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04559 11 1076 Primary Pumps ATPases AT4G29900 70.131 0.0 1506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04559 K01537 - gmx:100790157 1678.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04559 04 53207197 53216575 Tsu08g02708 08 41349602 41368552 PCT