Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04554 ATGGTTTCAGATCCAGTAATGATTCCTAAGATGAGGATGCAAGAACAGATGGCTATACAAGAAGCTGCTTCTGCTGGAATGAAAAGCATGGAACATTTCATTCGTGTGCTTTCTTctacatcatcttcttcatcttctgatcaACGTAACCGTTTAGATCTGGTCAATAAACTTGATTGTACTGAAATTACTGATTTCACTGTTTCTAAGTTCAAACAGGTTATTAACTTATTGAATCGTACTGGTCACGCTCGCTTTCGTCGTGGACCGtccactttttcttcttctccatcttcatcttcttctcaatTTCAATCTGAAAAATTCAATCCTCAACCACAGTCAAATactcttgtttttgcaaaaccGATACAAACAGTTAAACCAAATTCAAATCTGAAACCTAAACAGAACCAATCTACAGATTTATCTATTTCTCAATACTCTAAATCCAAGGAAGCCTATAGCGTCTCCACCACTACTTCCTCTTTCCTTTCCACCATCACCGGAGACGGAAGTGTTTCCGATGGCAAAATAGGTCCTATCATCTCCTCCGGTAAGCCACCTCTAGCTTCATCTCACCGGAAAAGATGTCACGAAGCAACCGTCTCCGGCAAAGTATCGTCCTCCGGTCCCTGCCATTGCTCCAAGAGAAGAAAATCTCGCGTGAAGAGAACAATTCGCGTTCCAGCAATAAGTTCCAAGGTTGCTGATATTCCCGCTGATGAATTCTCATGGAGGAAATACGGTCAAAAACCTATTAAAGGTTCACCTTATCCACGGTAA 786 0.3715 MVSDPVMIPKMRMQEQMAIQEAASAGMKSMEHFIRVLSSTSSSSSSDQRNRLDLVNKLDCTEITDFTVSKFKQVINLLNRTGHARFRRGPSTFSSSPSSSSSQFQSEKFNPQPQSNTLVFAKPIQTVKPNSNLKPKQNQSTDLSISQYSKSKEAYSVSTTTSSFLSTITGDGSVSDGKIGPIISSGKPPLASSHRKRCHEATVSGKVSSSGPCHCSKRRKSRVKRTIRVPAISSKVADIPADEFSWRKYGQKPIKGSPYPR 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04554 261 MobiDBLite consensus disorder prediction 85 114 - -
Tsu04g04554 261 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 9 261 IPR044810 GO:0003700
Tsu04g04554 261 MobiDBLite consensus disorder prediction 88 114 - -
Tsu04g04554 261 SUPERFAMILY WRKY DNA-binding domain 238 261 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu04g04554 261 Gene3D WRKY domain 219 261 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu04g04554 261 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 9 261 - -
Tsu04g04554 261 Pfam WRKY DNA -binding domain 242 261 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu04g04554 261 Pfam Plant zinc cluster domain 195 238 IPR018872 -
Tsu04g04554 261 ProSiteProfiles WRKY domain profile. 235 261 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04554 Tsu-Chr4 53171991 53173503 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04554 1 261 WRKY Transcription Factor Family AT4G31550 50.000 1.13e-77 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu04g04554 Plant_zn_clust 1.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04554 - - gmx:732589 313.923
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04554 04 53171991 53173503 Tsu04g04554 04 53171991 53173503 ECH
Tsu05g00589 05 4855568 4856483 Tsu04g04554 04 53171991 53173503 PCT