Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04550 ATGGGGAACTGTTGGACTACAAGTCTTCAATCCTCAGGCGATCGTCCCAACTCCAACACAAGCAATCAATCAGGGAGTATTCTGTTTTCTGCTGGTCTCAGCAACTTAAGATTGGTAAGGAACGGCAATTCCGCATCTCTTGGGCGTAGCAGCAACTCTGGAGGAAATAGTACACTAtttagtagtaataataatcaCTCAACAGGCAATAACACAAGTACATCCTTTTGGGATTCTGAGAATAGCCAGGCTTCTCGAGTAAGAGATGAGGAAGAGTTTCCTTATGGGCATATCTTGGATGCTGCAAACTTGAAAGTTTTTACTTGGGCAGAACTGAAATCGGCTACTAGAAATTTTCGTCCAGAAAATTTGTTAGGAGAGGGTGGGTTCGGTAAAGTATTCAAGGGTTTGATAAAGGAGGGAGCAGAATCCAAAAAAGGTGAGGTTTTGACTATTGCCATCAAGATATTGGATTCTCACAGTACGCAAGGATTTGCAGAATGGCAGTCAGAGGTGAATTTCTTAGGAAGGCTTTCTCATCCCAGCCTTGTAAAGCTGTTGGGATTTGGGCATGAGGATGGTCAGCTATTTCTCGTGTATGAATTTATGCCCCGCGGTAGCTTGGATAACCACCTGTTTGGAAGAGGTTCAAATGTTCGGCCACTTTCATGGGACAAAAGGCTGAAAGTTATAATTGGAGCAGCTAGGGGACTAAATTTCCTTCACTCGGAGAAAATTATATACAGAGATTTTAAGCCCTCAAATATACTACTTGACAAGGCATACACAGCCAAGTTATCAGACTTTGGCTTGGCCAAATCTGGTCCTTCCGATGACCACACTCACGTATCAACACGGGTTGTGGGAACAGGCGGCTATGCTGCCCCAGAGTACATGCGCACAGGTCATTTGTATGTGAAAAGTGATGTATATGGATTTGGGCTTGTTTTGATGGAGATATTAACAGGTAAGCGGATAGGCGACATAAAACGTTTTAGTGAGCGAAAGCCCTTATGTGATTGGCTCAAAACAAACCTATTAAATAGAGCGAAATTGAGAAGCAACATGGATCCAAAGTTGGAAGGCAAGTATCCACCCAACTTAGCTTCACAAGTAGCTCAACTTGCTCTCAAATGCATTCAAACAGAGCACAAAATTAGGCCATCAATGAAGGAAGTTGTTGAAACATTGGAAAGTATTGAAGCAGCCAATGATAAACCAGCAGATAACAGAAAAAGGACTACTAATTCGAGGGAAGTTCAACTACATAGCCAACCAGATGGTGGTTAA 1290 0.4225 MGNCWTTSLQSSGDRPNSNTSNQSGSILFSAGLSNLRLVRNGNSASLGRSSNSGGNSTLFSSNNNHSTGNNTSTSFWDSENSQASRVRDEEEFPYGHILDAANLKVFTWAELKSATRNFRPENLLGEGGFGKVFKGLIKEGAESKKGEVLTIAIKILDSHSTQGFAEWQSEVNFLGRLSHPSLVKLLGFGHEDGQLFLVYEFMPRGSLDNHLFGRGSNVRPLSWDKRLKVIIGAARGLNFLHSEKIIYRDFKPSNILLDKAYTAKLSDFGLAKSGPSDDHTHVSTRVVGTGGYAAPEYMRTGHLYVKSDVYGFGLVLMEILTGKRIGDIKRFSERKPLCDWLKTNLLNRAKLRSNMDPKLEGKYPPNLASQVAQLALKCIQTEHKIRPSMKEVVETLESIEAANDKPADNRKRTTNSREVQLHSQPDGG 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04550 429 SUPERFAMILY Protein kinase-like (PK-like) 99 397 IPR011009 -
Tsu04g04550 429 MobiDBLite consensus disorder prediction 400 429 - -
Tsu04g04550 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 246 258 IPR008271 GO:0004672|GO:0006468
Tsu04g04550 429 Gene3D Phosphorylase Kinase; domain 1 103 202 - -
Tsu04g04550 429 MobiDBLite consensus disorder prediction 45 82 - -
Tsu04g04550 429 Gene3D Transferase(Phosphotransferase) domain 1 203 424 - -
Tsu04g04550 429 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-RLCK-VIIA-2 FAMILY-RELATED 17 429 - -
Tsu04g04550 429 PANTHER OS01G0588500 PROTEIN-RELATED 17 429 - -
Tsu04g04550 429 MobiDBLite consensus disorder prediction 400 418 - -
Tsu04g04550 429 Pfam Protein tyrosine and serine/threonine kinase 123 397 IPR001245 GO:0004672|GO:0006468
Tsu04g04550 429 MobiDBLite consensus disorder prediction 45 83 - -
Tsu04g04550 429 ProSiteProfiles Protein kinase domain profile. 119 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04550 429 ProSitePatterns Protein kinases ATP-binding region signature. 125 155 IPR017441 GO:0005524
Tsu04g04550 429 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04550 Tsu-Chr4 53149263 53152116 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04550 105 405 Glycoside Hydrolase AT3G07070 45.066 8.79e-86 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Tsu04g04550 PK_Tyr_Ser-Thr 1.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04550 - - gmx:100813304 600.512