Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04549 ATGGGGAACTGTTGGACTACAAGTCTTCAATCCTCAGGCAATCATCTCAACTCCAATACTGCTCCTAACACCAATAATCAACCAGATAACAACTTTCGGTTATCTGCTGGTTTCAGCAACTTAAGATTGATAAGGAATGACAATTCCACATCTCTTGGGCGCAGCAGCAACTCTGGAGGAAATAGCAAACTATTTAGTAGTAACAATCACTCAACAGGCAATAATACAAGTACATCCTTTTGGGGTTCTGAGAATAGCCAGACCACTCGAGCAAGAGATGAGGAGTTTCCTTATGGGCAAATCTTGGATGCTGCAAACTTGAAAGTTTTTACTTTGGTAGAACTGAAGGCAGCCACTAGAAATTTCCGTCCAGATACTCTGTTAGGAGAGGGTGGTTTTGGTAGAGTATACAAGGGTTTGTTTAAGGAGAGTGCAGCGTCAAAAAGAGGCGAGGGTTTGACTATTGCCATCAAGAAATTGAATTCCGACAGCAGACAAGGAGTTGCAGAATGGCAGTCAGAGGTGAATTTCTTAGGAAGGCTTTCTCACCCCAACCTTGTAAAGCTGTTGGGATTTGGGCGTGAGGATGCTGAGCTATTTCTGGTGTATGAGTTTTTGCACCGTGGCAGCTTGGATAATCACCTATTTGGAAGAGGTTCAACGGTCCAGCCACTTTCATGGGACGGAAGGCTGAAAGTTATGATCGGAGCAGCTAGGGGACTAAATTTCCTTCACTCATTGGagaagaaaattatatatagagATTTCAAGCCCTCAAATATACTACTTGACAAGGCATACACGGCCAAATTGTCGGACTTTGGCTTGGCCAGATCTGTTCCTTCTGATGATCACACTCACGTATCAACACAGGTTGTGGGAACATGTGGCTATGCCGCCCCAGAGTACATTGCCACAGGTCATTTGTATGTGAAAAGTGATGTATATGGATTTGGGATTGTTTTGTTGGAGATACTCACCGGTAAGCGGATAGGCGAGATAATACGCCTTAGTAAGCCAAAGTCCTTGCAGGTTTGGCTCAAATCAAACCTATTAAATAGAGCGAAATCGAGAAGCAACATGGATGCAAAGTTGGGAGGCAAGTATCCACCCAATTTAGCTTCACAAGTAGCTCAACTCGCTCTCAAATGCATCCAAATAGAACCCAAAGTGAGGCCATCAATGAAGGAAGTTGTTGAAACATTGGAAAGTATTGAAGCAGCCAATGATAAACCAGCTGATAACAGAAAGAGGACTACTAATTCCAGGGAAGTTCAACTACATGGCCAACCAGATGGTGGAATCAAGGAGAGGAATGAGGCATACACGGCCAAATTGTCAGACTTTGGCTTGGCCAGATCTGTTCCTTCTGATGATCACACTCACGTATCAACACAGGTTGTGGGAACATGTGGCTATGCCGCCCCAGAGTACATTGCCACAGGTCATTTGTATGTGAAAAGTGATGTATATAGATTTGGGATTGTTTTGTTGGAGATACTCACCGGTAAGCGGATAGGCGAGATAATACGCCTTAGTGAGCCAAAGTCCTTGCAGGTTTGGCTCAAATCAAACCTATTAAGTAGAGCGAAATCGAGAAGCAACATGGATGCCAAGTTGGGAGGCAAGTATCCACCCAATTTAGCTTCACAAGTAGCTCAACTTGctctcaaatgcatacaaataGAACCCAAAGTGAGGCCATCAATGAAGGAAGTTGTTGAAACATTGGAAAAAAGTATTGAAGCAGCCAATGATAAACCAGCTGATAAAAGAAAGAGGACTACTAATTCCAGGGAAGTTAAACTGCATGGCCAACCAGATGGTGGTTAA 1833 0.4288 MGNCWTTSLQSSGNHLNSNTAPNTNNQPDNNFRLSAGFSNLRLIRNDNSTSLGRSSNSGGNSKLFSSNNHSTGNNTSTSFWGSENSQTTRARDEEFPYGQILDAANLKVFTLVELKAATRNFRPDTLLGEGGFGRVYKGLFKESAASKRGEGLTIAIKKLNSDSRQGVAEWQSEVNFLGRLSHPNLVKLLGFGREDAELFLVYEFLHRGSLDNHLFGRGSTVQPLSWDGRLKVMIGAARGLNFLHSLEKKIIYRDFKPSNILLDKAYTAKLSDFGLARSVPSDDHTHVSTQVVGTCGYAAPEYIATGHLYVKSDVYGFGIVLLEILTGKRIGEIIRLSKPKSLQVWLKSNLLNRAKSRSNMDAKLGGKYPPNLASQVAQLALKCIQIEPKVRPSMKEVVETLESIEAANDKPADNRKRTTNSREVQLHGQPDGGIKERNEAYTAKLSDFGLARSVPSDDHTHVSTQVVGTCGYAAPEYIATGHLYVKSDVYRFGIVLLEILTGKRIGEIIRLSEPKSLQVWLKSNLLSRAKSRSNMDAKLGGKYPPNLASQVAQLALKCIQIEPKVRPSMKEVVETLEKSIEAANDKPADKRKRTTNSREVKLHGQPDGG 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04549 610 Pfam Protein tyrosine and serine/threonine kinase 126 402 IPR001245 GO:0004672|GO:0006468
Tsu04g04549 610 Pfam Protein tyrosine and serine/threonine kinase 441 577 IPR001245 GO:0004672|GO:0006468
Tsu04g04549 610 PANTHER OS01G0588500 PROTEIN-RELATED 12 434 - -
Tsu04g04549 610 MobiDBLite consensus disorder prediction 1 32 - -
Tsu04g04549 610 MobiDBLite consensus disorder prediction 407 423 - -
Tsu04g04549 610 SUPERFAMILY Protein kinase-like (PK-like) 106 407 IPR011009 -
Tsu04g04549 610 MobiDBLite consensus disorder prediction 582 610 - -
Tsu04g04549 610 MobiDBLite consensus disorder prediction 49 88 - -
Tsu04g04549 610 MobiDBLite consensus disorder prediction 407 434 - -
Tsu04g04549 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Tsu04g04549 610 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-RLCK-VIIA-2 FAMILY-RELATED 12 434 - -
Tsu04g04549 610 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-RLCK-VIIA-2 FAMILY-RELATED 440 610 - -
Tsu04g04549 610 ProSiteProfiles Protein kinase domain profile. 122 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04549 610 Gene3D Transferase(Phosphotransferase) domain 1 206 429 - -
Tsu04g04549 610 Gene3D Transferase(Phosphotransferase) domain 1 437 604 - -
Tsu04g04549 610 MobiDBLite consensus disorder prediction 582 601 - -
Tsu04g04549 610 PANTHER OS01G0588500 PROTEIN-RELATED 440 610 - -
Tsu04g04549 610 Gene3D Phosphorylase Kinase; domain 1 83 205 - -
Tsu04g04549 610 ProSitePatterns Protein kinases ATP-binding region signature. 128 159 IPR017441 GO:0005524
Tsu04g04549 610 SUPERFAMILY Protein kinase-like (PK-like) 441 575 IPR011009 -
Tsu04g04549 610 MobiDBLite consensus disorder prediction 49 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04549 Tsu-Chr4 53140589 53146280 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04549 442 577 Glycoside Hydrolase AT3G07070 43.382 1.12e-28 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Tsu04g04549 PK_Tyr_Ser-Thr 8.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04549 - - gmx:100813304 642.884