Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04544 ATGGAAGAAAGTGATCATGAAGAATGCAACACAGGTTTATGTCTAGGATTGGGAGGAGGACACGTGGCTaaaaaggtgaagaagcagaaatTATTGAACAAACCTTTGATGGCTTGTTTCGACCTAGCTTTTGAGCTTTCTCCTAAAGGAGAAGCCATGAACGTATACAATAATAATCATAACAAGAAGGGTGAAAGATTGAGCTTGGAGAGACAACAAAATTATCCGAATGCAACTTATAGCACCGATTCtgaaaacaataacaacaacaacaaggatAGTAGAAAGAAACTGAGGCTAACAAAGGAGCAATCAACCATACTTGAGAACACCTTCAAGCTCCACAACACTCTTAATCCGgtCCAGAAACAATCACTTGCtgaccaattgaatttaaaGACTAGACAAATTGAAGTTTGGTTTCAAAATAGGAGAGCAAGGACGAAGCTGAAGCAAACAGAAGTGGATTATGAGTTGTTGAAAAAACATTGTCAAAATCTAAGTGATGAGAAcagaagattgaagaaggaattGCAGGAACTCAAACTTGTACAATCTCCATTATGCCCTCAACGTACTCCATCAAAACCCAAAATGTGTTCTTCTTGTGACCAGAAAATGTTGAAGCTCAATGAACTAGAGAACAACAATTAA 654 0.3349 MEESDHEECNTGLCLGLGGGHVAKKVKKQKLLNKPLMACFDLAFELSPKGEAMNVYNNNHNKKGERLSLERQQNYPNATYSTDSENNNNNNKDSRKKLRLTKEQSTILENTFKLHNTLNPVQKQSLADQLNLKTRQIEVWFQNRRARTKLKQTEVDYELLKKHCQNLSDENRRLKKELQELKLVQSPLCPQRTPSKPKMCSSCDQKMLKLNELENNN 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04544 217 PANTHER - 10 211 - -
Tsu04g04544 217 ProSitePatterns 'Homeobox' domain signature. 126 149 IPR017970 GO:0000981|GO:0006355
Tsu04g04544 217 SUPERFAMILY Homeodomain-like 76 152 IPR009057 -
Tsu04g04544 217 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 10 211 - -
Tsu04g04544 217 Pfam Homeobox associated leucine zipper 151 182 IPR003106 GO:0006355|GO:0043565
Tsu04g04544 217 MobiDBLite consensus disorder prediction 77 97 - -
Tsu04g04544 217 ProSiteProfiles 'Homeobox' domain profile. 91 151 IPR001356 GO:0003677
Tsu04g04544 217 Pfam Homeodomain 95 149 IPR001356 GO:0003677
Tsu04g04544 217 SMART halz 151 193 IPR003106 GO:0006355|GO:0043565
Tsu04g04544 217 CDD homeodomain 95 152 IPR001356 GO:0003677
Tsu04g04544 217 Gene3D - 86 156 - -
Tsu04g04544 217 SMART HOX_1 93 155 IPR001356 GO:0003677
Tsu04g04544 217 Coils Coil 143 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04544 Tsu-Chr4 53108155 53109985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04544 81 205 Homeobox Transcription Factor Family AT3G60390 58.462 5.80e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tsu04g04544 Homeodomain 7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04544 K09338 - gmx:100812222 220.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04544 04 53108155 53109985 Tsu08g02689 08 41038683 41040627 PCT