Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04542 ATGTCTCGAAGATTACTTCAACCCCAAGAAACACCTCCTTCATCGTCATCATCCTCTTCCACGCCTCACCACTTCTCTGGAGCTTTGTTCTTTTTCCTTGGAGGGATTGTAGTGCTAATCATATTGCTTGTTATTATCTTTGTATGCTGGAAGCGTATTAAACGCACCCCAACAGAATTACCTGAGAAGACAGCTTCACCACCAAGTCAGACTCAGAAGCATGGATTCATGGAGTTCATTAGTGGGAACCTTAGGACAATTAGCTATTTTGATTTCCAGACATTGAGAAAGGCCACGAAGAATTTTCATCGAAGAAATCTTCTTGGAAGTGGTGGATTTGGCCCTGTCTATCAGGGAAAGTTGGTAGATGGAAGGCTAGTTGCTTGTAAGAAACTGTCTCTTGACAAATCTCAGCAAGGAGAAAGAGAATTTCTAGCAGAAGTGAGAATGATCACAAGCATCCAGCACAAAAATCTCGTTCGCCTTCTCGGATGTTGCTCAGATGGACCTCAAAGGATACTTGTGTACGAATATATGAAGAACAAAAGTTTGGACCTCTTTATACACGGGAAGAACGATGAATATCTTAATTGGAGTACTAGATTCCAAATTATTCTTGGAGTAGCGCGGGGATTGCAATACCTTCACGAGGATTCACATGTAAGAATTGTTCATCGAGATATCAAAGCAAGCAACATTCTTCTTGACGAAAAGTTTCAACCGAGGATCGGAGATTTTGGACTAGCTAGGTTCTTTCCTGAAGACCAAGCTTACCTTAGCACTCAATTTGCTGGAACATTAGGTTATACAGCTCCTGAATATGCTATTAGAGGAGAACTGTCCGAAAAGGCAGACATCTATAGTTTTGGAGTTCTTGTGCTCGAAGTCATCAGCTGTAGAAAAAACACAGATCTCACTTTACCATCAGATATGCAGTACCTCCCTGAATATGCATGGAAACTTTATGAGAAGTCGATGGTGATGGATCTTATAGATCCAAAGTTGAGAGAAAAAGGATATGTAGAAAAAGATGTTATGCAAGCATTCCATGTGGCTTTTTTATGCCTTCAACCACATCCAGATTTGAGACCTGCAATGTCACAAATTGTAGCGATGTTGacatttaaaattgatatgGTTACAACACCAATGAGGCCGGCTTTCCTTGATCGAAGGCGCGTAATGGATGACGAGAACCATTCTTGGGAAGTTATATCTGAGGTTTTACAAACTCCTGTAGCTAGTGATTCTATGTTATAA 1260 0.404 MSRRLLQPQETPPSSSSSSSTPHHFSGALFFFLGGIVVLIILLVIIFVCWKRIKRTPTELPEKTASPPSQTQKHGFMEFISGNLRTISYFDFQTLRKATKNFHRRNLLGSGGFGPVYQGKLVDGRLVACKKLSLDKSQQGEREFLAEVRMITSIQHKNLVRLLGCCSDGPQRILVYEYMKNKSLDLFIHGKNDEYLNWSTRFQIILGVARGLQYLHEDSHVRIVHRDIKASNILLDEKFQPRIGDFGLARFFPEDQAYLSTQFAGTLGYTAPEYAIRGELSEKADIYSFGVLVLEVISCRKNTDLTLPSDMQYLPEYAWKLYEKSMVMDLIDPKLREKGYVEKDVMQAFHVAFLCLQPHPDLRPAMSQIVAMLTFKIDMVTTPMRPAFLDRRRVMDDENHSWEVISEVLQTPVASDSML 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04542 419 PANTHER RECEPTOR-LIKE KINASE 80 388 - -
Tsu04g04542 419 Gene3D Transferase(Phosphotransferase) domain 1 179 382 - -
Tsu04g04542 419 Pfam Protein tyrosine and serine/threonine kinase 105 373 IPR001245 GO:0004672|GO:0006468
Tsu04g04542 419 SMART serkin_6 102 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04542 419 SUPERFAMILY Protein kinase-like (PK-like) 84 376 IPR011009 -
Tsu04g04542 419 MobiDBLite consensus disorder prediction 1 21 - -
Tsu04g04542 419 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 80 388 - -
Tsu04g04542 419 CDD STKc_IRAK 108 374 - -
Tsu04g04542 419 Gene3D Phosphorylase Kinase; domain 1 76 178 - -
Tsu04g04542 419 ProSiteProfiles Protein kinase domain profile. 102 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04542 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04542 Tsu-Chr4 53080178 53082660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04542 8 389 Receptor kinase-like Gene Family AT1G56120 43.603 1.70e-99 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu04g04542 PK_Tyr_Ser-Thr 6.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04542 - - ccaj:109792436 638.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04542 04 53080178 53082660 Tsu04g04542 04 53080178 53082660 ECH
Tsu04g04542 04 53080178 53082660 Tsu08g02681 08 40896733 40899978 PCT