Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04537 ATGGTCTCAAGTGGATCATGGGATAATAATTCTACTGGTGAAAATCATGAGATCATCAAAAGTAAACACAAGCTGACAATTAGATggaagaaagaagaaattattaataataataatattgaagcagctgatcatcatcatcatcatcatcatgatggTACTTCAGTGAAGTGGATGTCTTCAAAGATGAGAATGATGAGGAAGATGATAGTTTCTGATCAAACTAGTGGTGGTTCTTCTAACATAGCTAGCAATTCAAAGCAAAAATTTGAAGATCAAAAGCAACCACTTTCACCACTAGGAAGCAGCAGCACCAACAAttattcaaatcaaattagGGTTTGTTCTGATTGCAACACCACTAAGACCCCTCTTTGGAGGAGTGGACCAAGAGGCCCCAAGTCACTATGCAACGCATGTGGGATTAGACAAAGGAAGGCAAGACGTGCCTTGGCATTGGCTGCAGCATCGGCAAATGGTACAACAGTAACTGCTGATCAGACATCTTCTGTGAAGAGAAAAAAGTTGCAAACGAAAAAAGAGAATAAGTCCAAAATTGATTGTTCTACTTCTACACATTTGAAAAAGAAGACCAAGTTTGAATCAGAACCATCTCAAATAAGTAAAAAGGAGTTGATAACTTTTGAAGATTTGAGATTAAGTTTGAGTAAGAATTTGTCTGTTCAACAAGTTTTCCCTCAAGATGAAAGGGAAGAAGCTGCTATCCTTCTCATGGCTTTATCTTATGGATTAGTCCATGGTTGA 765 0.3412 MVSSGSWDNNSTGENHEIIKSKHKLTIRWKKEEIINNNNIEAADHHHHHHHDGTSVKWMSSKMRMMRKMIVSDQTSGGSSNIASNSKQKFEDQKQPLSPLGSSSTNNYSNQIRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRALALAAASANGTTVTADQTSSVKRKKLQTKKENKSKIDCSTSTHLKKKTKFESEPSQISKKELITFEDLRLSLSKNLSVQQVFPQDEREEAAILLMALSYGLVHG 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04537 254 ProSitePatterns GATA-type zinc finger domain. 115 140 IPR000679 GO:0006355|GO:0043565
Tsu04g04537 254 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 3 254 - -
Tsu04g04537 254 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 110 149 - -
Tsu04g04537 254 CDD ZnF_GATA 114 146 IPR000679 GO:0006355|GO:0043565
Tsu04g04537 254 Gene3D - 110 210 IPR013088 GO:0006355|GO:0008270
Tsu04g04537 254 ProSiteProfiles GATA-type zinc finger domain profile. 109 145 IPR000679 GO:0006355|GO:0043565
Tsu04g04537 254 MobiDBLite consensus disorder prediction 73 106 - -
Tsu04g04537 254 Pfam GATA zinc finger 115 148 IPR000679 GO:0006355|GO:0043565
Tsu04g04537 254 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 3 254 - -
Tsu04g04537 254 SMART GATA_3 109 160 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04537 Tsu-Chr4 53053048 53055289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04537 55 254 C2C2-Gata Transcription Factor Family AT4G26150 45.116 1.24e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tsu04g04537 GATA 3.8e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04537 - - mtr:MTR_4g126350 315.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04537 04 53053048 53055289 Tsu04g04537 04 53053048 53055289 ECH
Tsu04g04537 04 53053048 53055289 Tsu08g02673 08 40761525 40764103 PCT