Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04534 ATGGATATGGTTTTAGCACTGATGTTGCAGCTGTTAAAGTTCTGCATCATCTTTGGCTTTGCTGTGGCATCCAAAGGATTTGTTATATCCCCATCTCCAGAAAACTTACATGTGTATCCATCCCCTATTAAAACACCTGGTTCTTCCCACCAAAAAGATTCACATAGCACCATTTCTCCTAGCTCTACAACAATACACAATGGGCCATTCTCTCACTCTCCGATAGCATTATCACCGCCATCTGTAAAAGCAAGTCCACCACCAAGGAAAGCTCCTGTTGTTAGGCCTCCTGTCTCAACACCAACTGCCCGAGCATATATTCCCCCTCCCATATCCACTCCTTCAAGAATCATCAATCCGGGAAATGGAAGAGCACCGATTGCTGCACCTTTGTACAAAACACCAAAGCCACTACCACATGTAATACATTCTCCTGCATTGACACCTGCGGCCTCAAATTATTATAAACATCATCATTCAAGACACGTAATTACCATCCCTGCTCCTGCGTCATCGTATATGGTTTCTCCTCCCATTTCAAGACCCCGAGaTAGAGCAATTCCTCCCTCATTATCACCATCAGGTAGACAAAGACATCATGTTCCACTACCATTGAACTCAGATTGTTTATCTACTGTCTGCACAGAGCCTTATGTAACTTCTCCTCTTGGAGAACCTTGCAGATGTGTTTGGCCCATGCGAGTCGGTCTTCGCCTTAGCGTTTCTCTGTATACCTTCTTCCCTTTGGTCTCGGAGCTGGCTTCTGAACTTGCCGGGGGGATTTTGATGAAGCGAAGTCAAGTTAGAATTACGGGAGCCAATGCAGCAAACCAGCAACCTGATAAAACCGTAGTCCTTATTGATTTAGTGCCACTTGGGGAGAAGTTTGATAATACTACATCCTCTATGATTTCTGACAGGTTTTGGCATAAAAAGGTTGTTATTAAAGGCTCCTACTTTGGATACTATGATGTTTTATATGTGAACTATCCAGGTTTACCTCCTTCTCCTCCTTTACCACCTTCAAGCATTAGCATGATAGATGGTGGTCCTTATTTCTCTGATGGCAATAATGGAAGGACAATAAAGCCCATTGGAGTTGACATACAGAAGAGGCAGAATAGAGGCGATCTTAGCAAAGGCTTTATTGCCATTGTTGCTGTTTCAGTTTTTGTAGCATTTGTTTTATGTACAGCTGCTGCCTATGTCATGTTCAAATTCAGAGTTCATGTTAGTCAAACAACATCGACTTCACGACTTTCACATCCTTCTCTTACCAAAGCATCAGTTACTGCTACTGGATCATTAATTGGAGACGGAGGGATTGGTTCAGTTTCCTCTTTATTTGAATCTAGCATTGCTGCTTATACAGTGTCTGCTAAGACTTTCAGTATGAATGACATTGAGAAAGCTACTGATAATTTTCATGCTTCAAGAATACTTGGAGAAGGTGGTTTTGGTCTTGTTTACAGTGGTGTCCTCGGAGACGAGACAAAAGTGGCAGTCAAGGTTCTAAAAAGGAGGGAGGATCATCAAGGTGATCGTGAATTCTTAGCTGAAGTTGAGATGCTTAGTCGTCTTCATCATAGAAATCTGGTCAGGTTGATTGGTATATGTGCTGAAGAGGACAGCTTCCGCTGCTTGGTTTATGAACTTATTCCAAATGGCAGCTTGGAATCTCATTTACATGGGGTTGATAGGGAAAAGTCTACACTTGATTGGGGTGCTAGGATGAAGATAGCTCTCGGTGCAGCTCGTGGTTTAGCTTATCTGCATGAAGATTCAAGTCCTTGTGTTATACATAGGGACTTCAAGTCTAGCAACATATTGTTGGAAGATGATTTTAGTCCAAAAGTATCTGATTTTGGATTGGCCTGGACCGCTACAGATGAGGAAAATAGACACATATCAACACGTGTTGTGGGAACTTTTGGTTACGTGGCTCCGGAGTATGCAATGACAGGTCATCTTCTTGTTAAGAGTGATGTTTACAGCTATGGTGTTGTTCTTCTAGAGCTTTTGACAGGAAGAAAACCTATAGACATGTCACAAGCTCCTGGTCAAGAGAATCTTGTTGCTTGGGCTCGTCCATTTCTCACAAATAAAGAAGGACTGGAAGTAATTATAGATCCATCTATAGGACGCGATGTCCCTTTCGATTGTGTGGCAAAAGTAGCAGCCATTGCTTCAATGTGTGTGCAATCAGAAGTATCGAACCGTCCATTCATGAGTGAAGTTGTTCAGGCTTTAAAACTTGTATGCAATGAATgtgaagaagcaaaagaagATGATGGTTCAAGAAGTTCTAACCAAGAGCATGAGGATTTATCTGTTGATGATATTGAAAGAGGCTTATCAGCCTCAGAATTTTTCAATTCACCGAGTAGAGTTGAAAGAATGGAGTATGAAACATTTAGAAGAAAGTCTTATTCAGGCCCTATGGGAAATGGAAGAAGCAAACAGTTATGGGAGATAATGAGAAGGCTTTCTGGTGGCAGTGTCAGTGATTGTGAACATGAAACTATATGA 2529 0.4156 MDMVLALMLQLLKFCIIFGFAVASKGFVISPSPENLHVYPSPIKTPGSSHQKDSHSTISPSSTTIHNGPFSHSPIALSPPSVKASPPPRKAPVVRPPVSTPTARAYIPPPISTPSRIINPGNGRAPIAAPLYKTPKPLPHVIHSPALTPAASNYYKHHHSRHVITIPAPASSYMVSPPISRPRDRAIPPSLSPSGRQRHHVPLPLNSDCLSTVCTEPYVTSPLGEPCRCVWPMRVGLRLSVSLYTFFPLVSELASELAGGILMKRSQVRITGANAANQQPDKTVVLIDLVPLGEKFDNTTSSMISDRFWHKKVVIKGSYFGYYDVLYVNYPGLPPSPPLPPSSISMIDGGPYFSDGNNGRTIKPIGVDIQKRQNRGDLSKGFIAIVAVSVFVAFVLCTAAAYVMFKFRVHVSQTTSTSRLSHPSLTKASVTATGSLIGDGGIGSVSSLFESSIAAYTVSAKTFSMNDIEKATDNFHASRILGEGGFGLVYSGVLGDETKVAVKVLKRREDHQGDREFLAEVEMLSRLHHRNLVRLIGICAEEDSFRCLVYELIPNGSLESHLHGVDREKSTLDWGARMKIALGAARGLAYLHEDSSPCVIHRDFKSSNILLEDDFSPKVSDFGLAWTATDEENRHISTRVVGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPIDMSQAPGQENLVAWARPFLTNKEGLEVIIDPSIGRDVPFDCVAKVAAIASMCVQSEVSNRPFMSEVVQALKLVCNECEEAKEDDGSRSSNQEHEDLSVDDIERGLSASEFFNSPSRVERMEYETFRRKSYSGPMGNGRSKQLWEIMRRLSGGSVSDCEHETI 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04534 842 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 89 201 - -
Tsu04g04534 842 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 202 838 - -
Tsu04g04534 842 Pfam Protein tyrosine and serine/threonine kinase 477 750 IPR001245 GO:0004672|GO:0006468
Tsu04g04534 842 SUPERFAMILY Protein kinase-like (PK-like) 455 750 IPR011009 -
Tsu04g04534 842 MobiDBLite consensus disorder prediction 42 71 - -
Tsu04g04534 842 ProSitePatterns Protein kinases ATP-binding region signature. 481 503 IPR017441 GO:0005524
Tsu04g04534 842 CDD STKc_IRAK 481 751 - -
Tsu04g04534 842 Gene3D Transferase(Phosphotransferase) domain 1 553 778 - -
Tsu04g04534 842 MobiDBLite consensus disorder prediction 80 95 - -
Tsu04g04534 842 MobiDBLite consensus disorder prediction 40 99 - -
Tsu04g04534 842 ProSitePatterns Serine/Threonine protein kinases active-site signature. 599 611 IPR008271 GO:0004672|GO:0006468
Tsu04g04534 842 ProSiteProfiles Protein kinase domain profile. 475 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04534 842 Gene3D Phosphorylase Kinase; domain 1 448 552 - -
Tsu04g04534 842 PANTHER OS01G0750732 PROTEIN 89 201 - -
Tsu04g04534 842 PANTHER OS01G0750732 PROTEIN 202 838 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04534 Tsu-Chr4 53015344 53020377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04534 206 841 Receptor kinase-like Gene Family AT5G56890 61.194 0.0 769
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Tsu04g04534 PK_Tyr_Ser-Thr 9.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04534 - - mtr:MTR_4g126270 1201.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04534 04 53015344 53020377 Tsu04g04534 04 53015344 53020377 ECH