Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04533 ATGGCCCCTCGAATCCTTCTCTGCGGCGACGTTTTTGGTCGCCTTAACCAACTCTTCAAGCGCGTCTCATCGGTTAACAAATCAGCGGGTCCATTCGACGCGCTCTTGTGCGTTGGACAATTCTTCCCTGACTCACCGGAGCTGCTTGATGAGTTCATGGCATACATTGAAGGTGGATCCACCATTCCCCTCCCAACTTACTTCATCGGCGATTACGGTGTCGCGGCCCCTAAAATCTTGTTGGCGGCTTCTAAGGATTCTGCTAACCGTGGTTTCAAGATGGACGGCTTGAAGGTTTGCGATAATTTGTTTTGGTTGAAAGGCAGTGGCAAATTCAACCTCTTCGAGTTATCTGTCACCTATTTATCTGGCAGGAAATCGTCGAATGTTCAGCAGTTTGGAACTTACAGTGAAGATGATGTTGATGCTCTGCGTGCGATAGCTGAAGAACCTGGAGTTGTTGATTTGTTCTTGACTAATGAATGGCCAAGTGGGGTCACAAATGGAGCAGTTGCTTCAGATATTCCTACTGGATTATCAGATTCCACTGGCAGTGATTCAACCATATCAGAGTTAGTACAAGAGATTAAGCCACGCTATCATATCGCTGGCTCTAAAGGTATATACTATGCCCGTGAACCATATTCCAATGTTGATGCCGTGCATGTTACACGTTTCATAGGGCTTGCATCTGTTGGAAATAGAGATAAGCAGAAATTTATTCATGCACTTTCTCCAACACCTGCATCCACCATGTCTTCAACTGAGATTGCCATGAAAACCACAAATACCACCTTATCACCATACACATCTGCGGAGGAAAAAGCTTCTCCAAAGGATACTGTAAAGAGATCCAGTGACGATATCTCTGATTCTCAACATTGGAGATATGATGTTTCACAAAAGCGACAGAAATATGACGCTTTGTGTTTCAAATTCGTATCTTCTGACTCTTGTCCACGGGGAGAGACATGCAATTTTCGACATGACACAGATGCAAGGGAGCACTGCTTGAGaggtgtttgttttgattttttgaacaAAGGAAAATGTGAAAGGGTTCCAGATTGCCGCTTTAGGCACAGCTTGCAGGATGAAGGTGATAAGCATCCTTCCAGGAAGCCTGGATCAGAAAAAACAAGGTCTAGCAGGTCAAGAGAATGTTGGTTTTGCTTGTCAAGCCCCAGTGTGGAGTCACATTTAATCATAAGCATTGGGGAAAATTACTATCTAGCACTGGCTAAAGGTCCACTTGTTGAAGACCATGTGCTGATAATACCTGTTGAGCATATgccaaatactttatttttgtCTTCTGAATCTGATGCTGAGCTCTTAAGGTTTCAGAGCAGTCTCAAGAGATATTTCAAGAACCAAGAAAAAGAAGTCATATTTTTTGAGTGGGCTTCCATACGTGGCACTCACGCCAATCTTCAGGTCATTCCCATTCCATCTTCCAAAGCAGCTATGGTTGAAAAAGCATTCAACTTAGCTGCACAAAAGTTGGAATTTAAATTTGTGACAAAGAAATTTGATAGTATTTCTGATGGAAGAAAGTTTTTGAAGACGCAAATTGATGGGAATTCAAGCTTGTTCTATGCTGAAATACCAGGAGGTACAATTTTGTTGCACCATGTTGACGAGAAAGAGACATTTCCTGTCCAATTTGGACGTGAGGTTCTGGCGGGGTTGCTTAACATGGCAGATAATGCAGATTGGAGGAATCGTAAACATAACAAAGATGAAGAGATGAAAATTGTGGAAGATTTCAAGGACCGATTTCAAGAATATGATCCAAACCATTGA 1806 0.4192 MAPRILLCGDVFGRLNQLFKRVSSVNKSAGPFDALLCVGQFFPDSPELLDEFMAYIEGGSTIPLPTYFIGDYGVAAPKILLAASKDSANRGFKMDGLKVCDNLFWLKGSGKFNLFELSVTYLSGRKSSNVQQFGTYSEDDVDALRAIAEEPGVVDLFLTNEWPSGVTNGAVASDIPTGLSDSTGSDSTISELVQEIKPRYHIAGSKGIYYAREPYSNVDAVHVTRFIGLASVGNRDKQKFIHALSPTPASTMSSTEIAMKTTNTTLSPYTSAEEKASPKDTVKRSSDDISDSQHWRYDVSQKRQKYDALCFKFVSSDSCPRGETCNFRHDTDAREHCLRGVCFDFLNKGKCERVPDCRFRHSLQDEGDKHPSRKPGSEKTRSSRSRECWFCLSSPSVESHLIISIGENYYLALAKGPLVEDHVLIIPVEHMPNTLFLSSESDAELLRFQSSLKRYFKNQEKEVIFFEWASIRGTHANLQVIPIPSSKAAMVEKAFNLAAQKLEFKFVTKKFDSISDGRKFLKTQIDGNSSLFYAEIPGGTILLHHVDEKETFPVQFGREVLAGLLNMADNADWRNRKHNKDEEMKIVEDFKDRFQEYDPNH 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04533 601 Gene3D - 382 511 IPR036265 -
Tsu04g04533 601 ProSiteProfiles Zinc finger C3H1-type profile. 304 332 IPR000571 GO:0046872
Tsu04g04533 601 PANTHER CWF19-LIKE PROTEIN 1 1 600 - -
Tsu04g04533 601 SMART c3hfinal6 305 331 IPR000571 GO:0046872
Tsu04g04533 601 SMART c3hfinal6 338 363 IPR000571 GO:0046872
Tsu04g04533 601 Gene3D - 302 367 - -
Tsu04g04533 601 CDD MPP_CWF19_N 6 232 - -
Tsu04g04533 601 MobiDBLite consensus disorder prediction 262 288 - -
Tsu04g04533 601 SUPERFAMILY HIT-like 383 486 IPR036265 -
Tsu04g04533 601 Pfam Protein similar to CwfJ C-terminus 2 509 598 IPR006767 -
Tsu04g04533 601 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 1 600 IPR040194 -
Tsu04g04533 601 Pfam Protein similar to CwfJ C-terminus 1 379 495 IPR006768 -
Tsu04g04533 601 ProSiteProfiles Zinc finger C3H1-type profile. 341 364 IPR000571 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu04g04533 CwfJ_C_1 2.4e-38 CL0265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04533 K24939 - gmx:100782106 1026.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04533 04 53007151 53013954 Tsu04g04533 04 53007151 53013954 ECH