Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04530 ATGGaggaagaaaataatgaaatgaaatcaTTTAAGGATCTGGGCTTATCTGagttattggtggaagcttGTGACAATTTGGGTTGGAAGACTCCGCTAAAGATTCAAATAGAAGCAATTCCCCTTGCACTGCAAGGAAAAGATGTGATTGGACTTGCCCAAACGGGTTCTGGTAAGACTGGAGCTTTTGCTCTTCCTATATTGCATGCACTCTTAGAAGCACCACGCCCAAACCATTTCTTTGCTTGTGTGTTGTCTCCCACAAGGGAGCTTGCTATTCAAATTTCTGAACAGTTTGAAGCTCTAGGTTCTGGAATTGGTGTCAAGTGTGCTGTGCTTGTTGGAGGGATTGACATGGTACAACAATCGATAAAGATAGCAAAGCATCCTCATATTATTGTTGGGACTCCTGGACGTGTCTTGGATCACCTAAAAAATACCAAAGGATTTTCTCTCAGTAAACTAAAATACTTGGTCTTAGATGAGGCAGACAGGCTGTTGAATGAGGATTTTGAGGAATCACTTAATGAGATTTTAGGAATGATCCCTCGTGAACGGAGGACTTTCCTTTTTTCTGCTACGATGACGAAGAAGGTCGAGAAGCTCCAAAGGGTTTGTTTAAGGAATCCTGTGAAGattGAAGCATCAACCAAGTATTCTACCGTGGATACGCTGAAGCAACAATTTCGCTTCTTGCCAGCAAAACATAAGGATTGCTACCTCGTATATATTCTCACTGAAATGGCTGGAAGTACATCAATGGTGTTCACCCGGACATGTGATGCAACTCGGCTTCTTGCTTTGATTCTTAGGAATCTCGGTTTGAAAGCCATCCCAATTAACGGTCATATGAGTCAGCCAAAGCGACTTGGAGCCTTGAATAAGTTCAAATCCGGGGATTGCAATATTCTCCTTTGTACCGACGTAGCTAGTAGGGGACTGGATATTCCAGCAGTAGATATGGTGATTAACTATGACATTCCCACAAACTCCAAAGATTATATACATCGTGTGGGAAGGACTGCTCGGGCAGGGCGTTCTGGGGTTGCCATTTCCCTTGTGAACCAATATGAGCTAGAGTGGTACATTCAGATAGAGAAGCTTATAGGTGGGGagcattctctctctctctgtctctctctctctatttaa 1152 0.4036 MEEENNEMKSFKDLGLSELLVEACDNLGWKTPLKIQIEAIPLALQGKDVIGLAQTGSGKTGAFALPILHALLEAPRPNHFFACVLSPTRELAIQISEQFEALGSGIGVKCAVLVGGIDMVQQSIKIAKHPHIIVGTPGRVLDHLKNTKGFSLSKLKYLVLDEADRLLNEDFEESLNEILGMIPRERRTFLFSATMTKKVEKLQRVCLRNPVKIEASTKYSTVDTLKQQFRFLPAKHKDCYLVYILTEMAGSTSMVFTRTCDATRLLALILRNLGLKAIPINGHMSQPKRLGALNKFKSGDCNILLCTDVASRGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGGEHSLSLCLSLSI 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04530 383 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 366 IPR027417 -
Tsu04g04530 383 SMART ultradead3 28 228 IPR014001 -
Tsu04g04530 383 PANTHER RNA HELICASE 2 372 - -
Tsu04g04530 383 Pfam DEAD/DEAH box helicase 34 202 IPR011545 GO:0003676|GO:0005524
Tsu04g04530 383 PANTHER BNAC02G41920D PROTEIN 2 372 - -
Tsu04g04530 383 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 159 167 IPR000629 -
Tsu04g04530 383 Gene3D - 219 375 IPR027417 -
Tsu04g04530 383 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 240 383 IPR001650 -
Tsu04g04530 383 CDD SF2_C_DEAD 225 354 - -
Tsu04g04530 383 Gene3D - 1 218 IPR027417 -
Tsu04g04530 383 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 9 37 IPR014014 GO:0003724
Tsu04g04530 383 SMART helicmild6 264 345 IPR001650 -
Tsu04g04530 383 Pfam Helicase conserved C-terminal domain 240 345 IPR001650 -
Tsu04g04530 383 CDD DEADc_DDX47 10 214 IPR044765 GO:0005524
Tsu04g04530 383 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 40 213 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04530 Tsu-Chr4 52976838 52983677 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04530 8 367 Eukaryotic Initiation Factors Gene Family AT3G19760 32.143 5.30e-62 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04530 K14777 - gmx:100775796 678.322