Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04522 atggcGGTGTCTCACGGTGGATACGACGCTCAAATCGGTGGCCTAATCCCATCCGTAAAACCAGAGTTATTTGATGACAGTGCAGGTTCAAGTTCTTGTCAATACGACGACGTTTTAAGCCAAAGGAAAGATTCAGAACTAACCGTAGAAGAAGGTGCTACAGCTTCTCTTGCTATTAACATCAAAGAAGAAGTTGTTGAAGAAGACGGTGCtaacacttcatcttcttcgaTGAAGTTTCCAAAACCAATGGAAGGGTTACATGATACTGGTCCGCCACCGTTTCTGAAGAAGACGTATGAAATGGTGGAGGATCCGGAAACTGATCCGATTGTTTCATGGAGTGATTCTCGTGATAGTTTCATTGTTTGGGACTCTCATGAATTCTCCAAAATCCTTCTTCCAAAGTACTTTAAGCATAACAATTTTTCTAGCTTCATTCGCCAGCTCAACACCTATGGGTTTAGGAAGGTTGATTCAGACCGTTGGGAGTTTGCAAACGAAGGGTTTCAAGCAGGGAAAAAGCATTTGTTGAAGACCATAAGAAGGAGAAGTAAGTATAACAAACTACACCAAGGAGGGATGAATATGATGAAGCCTCCTGTAGAATCTGAAGTGGAGAAACTGAAGAAGGATCAGAACATGTTAAAATTGGAAATTCTGAAGCTAAGGCAGCAACAAGAGAATTCAAATATTCAACTCACAAATGTTCAAGAGCGAGCTCAGCGTGCGGAATTGAAACAATACCAGATGATGTATTTCCTCACCAAATTGGCCAAAAGGCCATTGTTTATGGACCAGTTAATCCAAAAGATTAAGCGGAATAGAGAGGCCGGTGGTAATATTGACATGGTTAAAAAACCTAGATTGCTTGGAACACAAGGTACTAGTGTAGACTATAGGTCTCAGGGTTGTCAACAATTTGCTACTTTGCAATCTGAATTGAATGGACTTTTTCCTGAAAATATGAACACTGGTAGAATGGAACCACCACCGGTTCCAACTCCAATGGAAAATGGATTGTGTGGCTCTTTGCATGAATTGAAGGCTTGTGGTGGCTCTAGACAAAATGTGCAAGATGTATCTTCTGCTTATCATGTTATGTCAGAGAATCTATTGGGTGAAAATTCAGTTATTGATGAAGAAATGGATGTGAATGACTCTAATATCTATCTTGAATTAGAGGATTTGATAACTAAGCCAACAGATTGGGGTGGATCTGCAAGTGGATTGGTGGGACAAACTAGTTAA 1251 0.3965 MAVSHGGYDAQIGGLIPSVKPELFDDSAGSSSCQYDDVLSQRKDSELTVEEGATASLAINIKEEVVEEDGANTSSSSMKFPKPMEGLHDTGPPPFLKKTYEMVEDPETDPIVSWSDSRDSFIVWDSHEFSKILLPKYFKHNNFSSFIRQLNTYGFRKVDSDRWEFANEGFQAGKKHLLKTIRRRSKYNKLHQGGMNMMKPPVESEVEKLKKDQNMLKLEILKLRQQQENSNIQLTNVQERAQRAELKQYQMMYFLTKLAKRPLFMDQLIQKIKRNREAGGNIDMVKKPRLLGTQGTSVDYRSQGCQQFATLQSELNGLFPENMNTGRMEPPPVPTPMENGLCGSLHELKACGGSRQNVQDVSSAYHVMSENLLGENSVIDEEMDVNDSNIYLELEDLITKPTDWGGSASGLVGQTS 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04522 416 Coils Coil 206 247 - -
Tsu04g04522 416 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 74 404 IPR027725 -
Tsu04g04522 416 SUPERFAMILY "Winged helix" DNA-binding domain 91 184 IPR036390 -
Tsu04g04522 416 SMART hsfneu3 91 184 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu04g04522 416 PRINTS Heat shock factor (HSF) domain signature 95 118 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu04g04522 416 PRINTS Heat shock factor (HSF) domain signature 133 145 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu04g04522 416 PRINTS Heat shock factor (HSF) domain signature 146 158 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu04g04522 416 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-9 74 404 - -
Tsu04g04522 416 Gene3D - 87 185 IPR036388 -
Tsu04g04522 416 Pfam HSF-type DNA-binding 95 184 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu04g04522 416 ProSitePatterns HSF-type DNA-binding domain signature. 134 158 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu04g04522 416 MobiDBLite consensus disorder prediction 68 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04522 Tsu-Chr4 52908053 52910165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04522 81 293 HSF AT2G26150 54.545 1.42e-76 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Tsu04g04522 HSF_DNA-bind 3.7e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04522 K09419 - gmx:100818430 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04522 04 52908053 52910165 Tsu04g04522 04 52908053 52910165 ECH