Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04519 atggaACCTCGTATTGGGAATAAGTTTCGATTGGGTAGGAAGATCGGTAGCGGCTCCTTTGGAGAGATCTACTTAgGTACTAATATTCAAACTAACGAAGAGGTTGCAATTAAGCTTGAAAATGTCAAGACTAAGCATCCTCAGTTGCTATACGAGTCCAAGTTGTACAGAATTCTCCAGGGAGGAACTGGAATTCCAAATGTTAAATGGTTTGGAGTGGAGGGAGACTACAATGTTTTAGTGATGGATCTGCTTGGACCTAGTCTTGAAGATCTATTTAACTTTTGTAGTAGAAAGTTATCACTCAAGACAGTTCTTATGCTTGCTGATCAAATGATCAACCGTGTTGAgttcattcattcaaaatcaatgcTACATCGAGATATCAAGCCAGATAATTTTCTAATGGGATTAGGAAGGCGTGCGAACCAGGTTTATGCTATTGATTTCGGTTTGGCTAAGAAATACAGAGATAGTTCAACCCATCAACACATTCCTTACAGggaaaataaaaatttaactgGCACCGCAAGATATGCTAGCATGAATACTCACCTTGGTATTGAACAAAGTCGAAGAGATGATTTAGAGTCTCTTGGTTATGTTTTGATGTACTTCCTGAGAGGAAGTCTTCCTTGGCAGGGACTCAAAGCAGGAACCAAGAAACAGAAGTATGATAGAATCAGTGAAAAAAAGGTTTCTACATCGATTGAAGCCTTATGTCGGGGTTATCCAACAGAATTTGCATCATACTTCCATTACTGCCGCTCATTAAGGTTTGATGATAAGCCAGATTATGCTTATCTCAAAAGGATATTTCGCGACCTGTTTATTCGTGAAGGATTCCAGTTTGATTACGTGTTTGACTGGACCATCTTGAAGTATCAGCAATCACAGCTTGCCACACCTCCAACACGGGCCATTGTACCTGGTACTGGAACCAGTTCTGCAATGCCACCAGGAGCAGAAGAAGGGCAACCCCCTGGTTTGGTTTCGGGGGATTCCTCGAGGCGCAGAATGTCAGGACCCATTTTGAATAATCTATCAAGTTCCAATGCTTTGGGTCAGTCAAGTGGATCTAGGCGGGTTGCTGTTTCTAGTAGTCGTGATGCATTTACTGGTGCTGAGTCAGATGTTCGTACACGCACTGCTGAGGCTAGCCCTGGAGTAGCACACAGAATTTTGGGTGGGCAAAGGAGTTCACCAATTGGATCTTCTGATCCCCAAAGATTATCTCGAGCTGGGAGAAATGCTTCTCAAGCCAATAATTATGAAAGTGCCCTTAGGGGCATGGAGGGTTTGCAGTTAGAGAATGATGAGAGGACCCATTAG 1332 0.4152 MEPRIGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVKWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFIHSKSMLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDRISEKKVSTSIEALCRGYPTEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQLATPPTRAIVPGTGTSSAMPPGAEEGQPPGLVSGDSSRRRMSGPILNNLSSSNALGQSSGSRRVAVSSSRDAFTGAESDVRTRTAEASPGVAHRILGGQRSSPIGSSDPQRLSRAGRNASQANNYESALRGMEGLQLENDERTH 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04519 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Tsu04g04519 443 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04519 443 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Tsu04g04519 443 PANTHER CASEIN KINASE-RELATED 1 308 - -
Tsu04g04519 443 PANTHER CASEIN KINASE-RELATED 347 423 - -
Tsu04g04519 443 PANTHER CASEIN KINASE I-LIKE 1 308 - -
Tsu04g04519 443 PANTHER CASEIN KINASE I-LIKE 347 423 - -
Tsu04g04519 443 MobiDBLite consensus disorder prediction 339 374 - -
Tsu04g04519 443 Gene3D Transferase(Phosphotransferase) domain 1 1 308 - -
Tsu04g04519 443 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04519 443 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Tsu04g04519 443 MobiDBLite consensus disorder prediction 303 443 - -
Tsu04g04519 443 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04519 443 MobiDBLite consensus disorder prediction 399 426 - -
Tsu04g04519 443 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04519 Tsu-Chr4 52885682 52892379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04519 7 223 EF-hand Containing Proteins AT2G17890 26.222 1.44e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Tsu04g04519 Pkinase 1.6e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04519 K02218 - gmx:100785851 803.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04519 04 52885682 52892379 Tsu04g04519 04 52885682 52892379 ECH