Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04510 ATGTCTACACCGAGATCAGTTGCAGTTGCCGTCAGTGGCGGCTCCGGTGCCGCCAAAGGTAGCCGACGAGCTTTACAGTGGGCGATGGAGAATGTTGTTCCTCAAGCAGATAGACTCATCTTAGTTCACGTCATCCCTAGAATCACTTCAATTCCATCTCCAGCTGGAGGGTATATTCCCATTTCGGAAGCAGATGCCCATGCCTTTGCAGCTTATGTGCAGGAAGTAAAACAGAAGTCTGAAGAAATCTTTGTTTCCTTCAAAAAACTATGTGAATCAAACACGATAGAAACCTTTCTGCTAGAAGATGACAATCCAGCAAATGCACTTCTTAGCTTTATCTCAGAGTCTGGGGTTCAAATATTAGTGCTGGGTTCCGATGACTCAAATTTTATTACAAGGAAGCTAAAAGGACCTGGTATACCGACTACCATTCTTAGAGGTGCTCCCGACAGCTGTGATGTATATGTTGTAGATAGAGATAGAATTGTATCAAAGTTAGCTGATTCTTCCTCTTCACATTCTCATGAGGAAGGCCCAAGGTACATTGTGTCTAATCGCCTAAATAAATCAGACAATGGTGCTAGCATTGGTGGACAAATGTCTGGAATCAGTGCATCCTCAACAGaacttaaaattctaaaaaatttcaaatttctatCAATATCAGAGCATAGTTACATTGGTCTGCAAACCTCTAGTCGTAGGAGTTCTTTTGAAAATTCTACTATAAGTGAAGAAGCAAATCCAGACAACTATGGAGACTATGTTGATACCATCAGTCTCCACTCATTTGATTCCATTGCATCTGCACATCATGAACCGTTAGTCATGCAAGAAGCAGAACGGTTGCAACTGGAGTTGCAGAATACGATTGCCATGTACAAACAGGTTTGTGAAGAACTGGCTCATGCTCAAAGCAAGGCCCTTTTACTTTCTTCTGAATCTCTGGAAGAagctaaaataataaatgcttCCTTGAAAAGAGAGGAGACTTTGAGAAAGATTGCTGCTGAAGAGAAAGCAAAGTATTTAAAAGTCATGAAGGAACTCGAGGAGTCAAAAAGTATGTTCGCCAAAGAGTCATATGAAAGGCAAATGGCTGAACTTAATGTCCTTAGAGAATCCATTGAAAAACAGAGAATTGTCGACACATTGCTCTCAAATGACAGGAGATACAGAAAATATACCATGGATGAAATCAGGATCGCAACAAACAATTTATCTGAGGACTTGGTAATTGGTGAAGGAGGATATGGGAAAGTTTATAAGTGCAATCTTGATCACACCCCAGTAGCTATAAAGGTTCTGCATCAGGACACAATCAACAAGAAAGCGGAGTTTCTGAAAGAGGTTGAGATTCTTAGTCAATTACACCATCCAAATATGGTTTTGTTACTTGGAGCCTGTCCTGAAAATGGTTGCCTTGTCTATGAATACCTGGAAAATGGAAGCCTAGAAGACTATCTTCTCAACAGAAGTGGAAAACCACCACTTCCTTGGTTTTTTCGATTTCGTATAGTTTTTGAAATGGCTTGTGGTCTCTCATTCTTGCATAATTCAAAGCCAGAGCCTATTGTTCATCGAGATATAAAACCCGGCAACATCTTGTTAGACAGAAATTATGTTAGCAAAATTTCAGATGTTGGATTAGCTAAACTCATTTCCGACGCTGTACCTGACAATATCACAGAGTACAGAGAATCAGTGCTTGCTGGTACACTTCATTACATGGACCCGGAGTATCAAAGAACTGGCACTGTTCGACCAAAATCAGATGTATATGCTTTTGGAGTAATAATTCTTCAATTGATAACTGCTCGCCATGCACGCGGACTTATTATGGCTATTGAAGATGCAATTACAAAAGGATCCTTTCGTGATATTTTAGATAAATCAGCTGGAGATTGGCCACTGAATGAGACAATTGAATTGGCTGAAATTGGTCTTAAATGCACTGCCCTTAGATGCAGAGATAGACCAGAACTTGATACTGAAGTTCTTCCACTGCTCAAAAGACTTTCTGATGTGGCAAATGCTAGTGTCAAGAAAGGAAGAAATAGTATATCCACCCCAAGCCAGTATTATTGTCCAATCCTTCAGGAAATCATGGATGAGCCATATATCGCCGCTGATGGTTTCACTTACGAGTACAGAGCAATCAAAGCATGGCTCAGCAAACACAATGTGTCACCAGTAACAAAGCATAAACTCAAGCATTCAGAGTTGATTCCAAACCATACTTTACGTTCTGCCATTCAGGAGTGGAAGTCAGAAATGACCTTACTTGATTAA 2295 0.3983 MSTPRSVAVAVSGGSGAAKGSRRALQWAMENVVPQADRLILVHVIPRITSIPSPAGGYIPISEADAHAFAAYVQEVKQKSEEIFVSFKKLCESNTIETFLLEDDNPANALLSFISESGVQILVLGSDDSNFITRKLKGPGIPTTILRGAPDSCDVYVVDRDRIVSKLADSSSSHSHEEGPRYIVSNRLNKSDNGASIGGQMSGISASSTELKILKNFKFLSISEHSYIGLQTSSRRSSFENSTISEEANPDNYGDYVDTISLHSFDSIASAHHEPLVMQEAERLQLELQNTIAMYKQVCEELAHAQSKALLLSSESLEEAKIINASLKREETLRKIAAEEKAKYLKVMKELEESKSMFAKESYERQMAELNVLRESIEKQRIVDTLLSNDRRYRKYTMDEIRIATNNLSEDLVIGEGGYGKVYKCNLDHTPVAIKVLHQDTINKKAEFLKEVEILSQLHHPNMVLLLGACPENGCLVYEYLENGSLEDYLLNRSGKPPLPWFFRFRIVFEMACGLSFLHNSKPEPIVHRDIKPGNILLDRNYVSKISDVGLAKLISDAVPDNITEYRESVLAGTLHYMDPEYQRTGTVRPKSDVYAFGVIILQLITARHARGLIMAIEDAITKGSFRDILDKSAGDWPLNETIELAEIGLKCTALRCRDRPELDTEVLPLLKRLSDVANASVKKGRNSISTPSQYYCPILQEIMDEPYIAADGFTYEYRAIKAWLSKHNVSPVTKHKLKHSELIPNHTLRSAIQEWKSEMTLLD 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04510 764 SMART Ubox_2 694 756 IPR003613 GO:0004842|GO:0016567
Tsu04g04510 764 CDD RING-Ubox_WDSUB1_like 695 735 - -
Tsu04g04510 764 Gene3D Phosphorylase Kinase; domain 1 387 480 - -
Tsu04g04510 764 ProSiteProfiles Protein kinase domain profile. 408 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04510 764 Pfam Protein tyrosine and serine/threonine kinase 413 664 IPR001245 GO:0004672|GO:0006468
Tsu04g04510 764 Gene3D Transferase(Phosphotransferase) domain 1 481 691 - -
Tsu04g04510 764 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 692 762 IPR013083 -
Tsu04g04510 764 ProSiteProfiles U-box domain profile. 690 763 IPR003613 GO:0004842|GO:0016567
Tsu04g04510 764 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 6 759 - -
Tsu04g04510 764 ProSitePatterns Protein kinases ATP-binding region signature. 414 435 IPR017441 GO:0005524
Tsu04g04510 764 SMART serkin_6 408 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04510 764 Coils Coil 763 764 - -
Tsu04g04510 764 Coils Coil 278 301 - -
Tsu04g04510 764 ProSitePatterns Serine/Threonine protein kinases active-site signature. 526 538 IPR008271 GO:0004672|GO:0006468
Tsu04g04510 764 SUPERFAMILY Protein kinase-like (PK-like) 391 663 IPR011009 -
Tsu04g04510 764 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 5 160 - -
Tsu04g04510 764 SUPERFAMILY RING/U-box 689 759 - -
Tsu04g04510 764 Pfam Universal stress protein family 20 149 IPR006016 -
Tsu04g04510 764 Pfam U-box domain 692 759 IPR003613 GO:0004842|GO:0016567
Tsu04g04510 764 CDD STK_N 6 158 - -
Tsu04g04510 764 Coils Coil 334 354 - -
Tsu04g04510 764 Gene3D HUPs 4 165 IPR014729 -
Tsu04g04510 764 Coils Coil 360 380 - -
Tsu04g04510 764 PANTHER OS02G0152300 PROTEIN 6 759 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04510 Tsu-Chr4 52802732 52808294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04510 6 762 Plant U-box Gene Family AT5G57035 54.124 0.0 843
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Tsu04g04510 PK_Tyr_Ser-Thr 2.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04510 - - gmx:100805896 1212.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04510 04 52802732 52808294 Tsu04g04510 04 52802732 52808294 ECH