Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04505 ATGGAGGAAATATCTTCAAGTGTTGCAGTACCATTTACACTTGGAAATTTGATTCAAAAGGATGCTTCGGTTACGACTCATATGGAGATAACCGGGTTAAAGCTTATGGCAAATACTGCTGCAGCTTTGATATTAAATCCTGCAGTTGGAAATGAAAATCATGCTGATGTTAGTCTTCAACATCAGATCACGGTATCTGCGGAGGTAAAGGAGAATCAAGTTGGATCTGCTGTTGTCTCAGAAATGGTGATTGAATGCGAGAGTAATTGGGTTTTGAGTGAAAACCGTAACCAGACAATAAAGGAAGATGAGATCATGTTAGCTGTGGATTTTCAGTGTCTGCATAATTCAGGCTCTCAATCGGTGGCAGATTCACCAATAATCGTCACGGTTGGTGATGATATTCATGGTAAGTTTAGTATAAATGAGGTACTTCCGGCTCTGAAGCCGGATCAGAATACGGTTTCTATTGCAATGGATATTGAGAGTGAAAATCGAAGTGTGTCAGAAGGGGCTGATCCAAAACTATCTGCTATGATTCTTGATCAGTTGGAAAAGGAGAACAAAACACAGAGAACAAGCTACCAGAATGGTTTGGAAGTGAGTAGTGATCCTCTTTGGGGTTTCTCATCAATCTGTGGAAATAGACCGGAGATGGAAGATGCTATTGCTGTTAAACCTCAACTTTTTCAAGTCCCTACAGAGATGCTAATGGATGACCATGTGAATGAAAACACAAAATACTCGCTAGCCCATTTTTTTGGTGTCTACGATGGACATGGGGGCTTTCAGGTTGCTAATTATTGCCAAGAACGTCTTCATTCAGTGTTGATTGATGAGATTGAAACGCAACGGTCAAGTTTGGCCGAACCAAACGGGAGAAATGATTGGAAGGAAAATTGGAAGATAGCATTGTCCAATTGTTTTCAGAAAGTAGATGATGAGATTGAACATGTTGCTCCTGAGACTGCGGGCTCCACTGCAGTGGTTGCCATTTTAAGTCAAACCCACATAATAGTTGCAAATTGTGGGGATTCAAGAGCTGTCTTGTATCGCGGGAAAGAAGCCATTGCATTGTCTTCTGACCACAAACCAAATCGAGAGGATGAGAGAGCTAGAATAGAAGCTGCAGGAGGAAGAGTCATACATTGGAAAGGATACAGAGTTCTTGGTGTCTTGGCCATGTCAAGGTCCATAGGTGATAGATACTTGAAACCATGGATAATTCCAGAACCAGAAGTTAATATTGTGCAAAGAGAGAGAAACGACGAGTGCCTTATTTTAGCAAGTGATGGTTTATGGGATGTAATTACAAATGAAGAAGCCTGTGAAATTGCAAGAAAGCGGATCCTTCTTTGGCATAAGAAGTATGGTGACAACGGAACAACAGTACATGACAAAGGAGAAGGAGGAGTTGATCTTGCATCTCAGTCTGCCGCTGAGTATCTATCTAAACTCGCCCTCCACAGAGGAAGTGGCGATAACATATCTGTAATTGTGATAGACTTAAAGGCTGTgagaaaattgaagagaaagaCATAA 1542 0.4086 MEEISSSVAVPFTLGNLIQKDASVTTHMEITGLKLMANTAAALILNPAVGNENHADVSLQHQITVSAEVKENQVGSAVVSEMVIECESNWVLSENRNQTIKEDEIMLAVDFQCLHNSGSQSVADSPIIVTVGDDIHGKFSINEVLPALKPDQNTVSIAMDIESENRSVSEGADPKLSAMILDQLEKENKTQRTSYQNGLEVSSDPLWGFSSICGNRPEMEDAIAVKPQLFQVPTEMLMDDHVNENTKYSLAHFFGVYDGHGGFQVANYCQERLHSVLIDEIETQRSSLAEPNGRNDWKENWKIALSNCFQKVDDEIEHVAPETAGSTAVVAILSQTHIIVANCGDSRAVLYRGKEAIALSSDHKPNREDERARIEAAGGRVIHWKGYRVLGVLAMSRSIGDRYLKPWIIPEPEVNIVQRERNDECLILASDGLWDVITNEEACEIARKRILLWHKKYGDNGTTVHDKGEGGVDLASQSAAEYLSKLALHRGSGDNISVIVIDLKAVRKLKRKT 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04505 513 PANTHER ALPHABET, ISOFORM E-RELATED 106 513 - -
Tsu04g04505 513 SMART PP2C_SIG_2 237 503 IPR001932 -
Tsu04g04505 513 ProSitePatterns PPM-type phosphatase domain signature. 253 261 IPR000222 GO:0043169
Tsu04g04505 513 ProSiteProfiles PPM-type phosphatase domain profile. 206 503 IPR001932 -
Tsu04g04505 513 SMART PP2C_4 196 501 IPR001932 -
Tsu04g04505 513 CDD PP2Cc 208 503 IPR001932 -
Tsu04g04505 513 Gene3D - 195 513 IPR036457 -
Tsu04g04505 513 PANTHER PROTEIN PHOSPHATASE 2C ABI2-LIKE PROTEIN 106 513 - -
Tsu04g04505 513 Pfam Protein phosphatase 2C 219 496 IPR001932 -
Tsu04g04505 513 SUPERFAMILY PP2C-like 204 504 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04505 Tsu-Chr4 52764111 52767186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04505 192 512 PP2C-type Phosphatase Gene Family AT4G26080 61.111 2.35e-137 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04505 K14497 - gmx:100789207 720.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04505 04 52764111 52767186 Tsu04g04505 04 52764111 52767186 ECH
Tsu04g04505 04 52764111 52767186 Tsu08g02590 08 38886722 38890225 PCT